Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0158 ATGCGAGCCGAAGCAATGGCTGGCACAAGGCTTTTCATTCTCAAGTCGATTTATAGTTCCTTCAACTTTTATTCGAAGCCGTGCTCGTTTCAGTCTTGCAAGTCTTACATAAAGATTTCCGAGCACGCTGACCGGGTTGTTAGACCAAGTGTTCTAAATTTACAACACTGCAAAGATGAATCTCGCAGCTCGAAGAACATCTCACACATTGGTTTCCAAAGAGCAGCTTCTGTATGTCGTTTACATATGCACAGTTACGGTACATTGTTGCCTGCATCATCAGCGAAATACTGGAACACTATGCCTCTTACTTCTCTCAGCCTTCTGTCAAATCGTCGGTTATATTCATCGGCTTCTAGCGGGAAAGTTGATATAAATGGAGATGCTGGTGTTCCAGCAGCTACTTCTGGTGTTGATGTGGATATTAGCAACCCCTCAGATGTTGGAAGCAATTTGCTTGAAAGAGCTAAGGATGTCTGGCAGGGTGCTTTAGATGCAGCATCTTTTACTGGGCAGAAGGCTAGAGAAGTGTATGATGAGTTGTCTCCTTATGCAGATAAACTATTGGATTCACATCCATATCTAAGAAATGTAATTGTTCCTGTGAGTATGACCTTAACTGCTACTCTTTTGGCTTGGGTGGTAATGCCTAGGCTTTTGAGAAGATTCCATAAGTATTCAATGCGAGGTCCTGTCGCCATACTATCTGGAAGCATATCTGTTGAGGAAATTCCCTATGAGAAAAGTTTTTGGGGTGCCTTGGAGGATCCTTTACGATATCTGGTTACCTTCTTTGCATTCTCTCAAATTGGCACAATGGTTGCACCAACCGCAGTAGCATCAGAGTTTGTTTCACAGGCATGCAGGGGAGCTGTTATCCTTTCCCTTGTCTGGTTTATATATCGTTGGAAAACAAACGTGTTATCTCGAGCCTTGGTCTCCCAGAATTTTGCAAGGCTTGAGCGGGAAAGGCTAATTACACTAGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCCGAGGCATCTGGGGTGGCTGTTCAATCTATGTTGACAGTTGGTGGCATTGGAGGAGTGGCCACTGCTTTTGCTGCAAGGGACGTACTTGGGAATTTTCTAAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCTCTCGGGGATACAATCAAGAAGGGACAAGGGGTGAGGATCCTCAAATTATATGGTCAAATCCATGGTGGTGAATCACAGTCATGTGTGTAA 1260 43.89 MRAEAMAGTRLFILKSIYSSFNFYSKPCSFQSCKSYIKISEHADRVVRPSVLNLQHCKDESRSSKNISHIGFQRAASVCRLHMHSYGTLLPASSAKYWNTMPLTSLSLLSNRRLYSSASSGKVDINGDAGVPAATSGVDVDISNPSDVGSNLLERAKDVWQGALDAASFTGQKAREVYDELSPYADKLLDSHPYLRNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRGPVAILSGSISVEEIPYEKSFWGALEDPLRYLVTFFAFSQIGTMVAPTAVASEFVSQACRGAVILSLVWFIYRWKTNVLSRALVSQNFARLERERLITLDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDVLGNFLSGLTMQFSQPFSLGDTIKKGQGVRILKLYGQIHGGESQSCV 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 906125 910701 + Sed0023991.2 Sed12g0158 731114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0158 419 Gene3D - 284 386 - -
Sed12g0158 419 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 167 399 - -
Sed12g0158 419 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 289 371 IPR011014 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0157 Sed-Chr12:906125 Sed12g0158 Sed-Chr12:906125 8.80E-220 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0158 K22047 - csv:101220483 549.28