Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0162 ATGACTGTTTACGATGCTGCATTTTTCAACTCCGTGCTCTCTAAGAAGACCTCCATCTTCGGCCTTCATCTCTGGGTACTGATAGGAATCTTCATCGGAACCCTAATAGTTCTCGCTCTGCTTCTTCTCTCGCTTTGCCTCACTTCTCGCGAGCGGAATCGCCACAAGAACCAAATCCGTGTTCATAAGTCCATAACCGACCATTCCCAATCTCCTCCCATTTCGAAAGAGATTCAGGAGATCGGGAAATCGGAGCCGGATCTTCACCGCCATGTGCAGCCGGAAGTTCATGTCGAGATCGGAAAGTTGGAGAATCGGGTTGTTGTTTCTGATAGATTGTCCAGTGGGGAGAGTAGAGACGCTGTGAGTGAAACTTCTTCGTTTGGATCTGGCGGTAATGTTGGGCCTGAGGTTTCGCATCTTGGTTGGGGTCGATGGTATACTCTGAGAGAGCTTGAGGCTGCTACTAATGGCTTGTGTGCAGAGAATGTGATTGGAGAAGGTGGATATGGGATTGTGTATTTGGGCATTTTGGGCGATGGTACCAGAATTGCGATCAAGAATCTCTTGAATAACAGGGGACAAGCTGAGAGGGAATTCAAAGTGGAAGTTGAAGCAATTGGACGAGTAAGACACAAGAATCTTGTCAGGTTGCTGGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTCAACAATGGCAATCTAGACCAATGGCTTCATGGCGACATTGGTGATGCAAGCCCCTTGACGTGGAAGATTCGTGTTAACATCATACTTGGAGCAGCAAAGGGATTGGCCTATCTTCATGAGGGTCTTGAACCTAAGGTTGTCCATCGTGATGTAAAATCTAGCAACATACTGATTGATCGTCAATGGAATGCTAAAGTATCTGATTTTGGGCTGGCCAAGCTTCTTTGTTCCGAAAGGAGCTACGTGACGACTCGTGTAATGGGTACATTTGGCTATGTTGCACCTGAGTATGCTTGCACGGGAATGTTGAATGAAAAGAGCGATGTTTATAGCTTTGGAATTCTAATTATGGAGATAATTTCTGGGCGGAGCCCTGTTGATTATAGTAGACCTCAAGGAGAGGTAAATTTGGTGGATTGGTTGAAAGCAATGGTTGGAGACAGAAAATCAGAGGAAGTGGTTGACCCCAAGTTGCCCGAGAAGCCTCCTTCCAAAGCTCTCAAACGTGTTATGCTGGTTGCTCTTCGGTGTGTCGATCCTGATGCTACGAAGAGGCCGAAAATGGGGCATGTCATTCATATGCTTGAGGCAGAAAATTTGCTGTCTAATGATGAACATCGGGTCGGTAAGGATTTCTCTCACTCAATTCAAGGTCATCAACATGAGAATCGAGCCGTTTCAAGACAAGTTAACCATCAGAAAGACGAAGGAACATCTTCTAATATAAGTGAAGGTGACAATGATGGAAACATTCAACATTCAAGTAGGTGGAGATAA 1482 45.34 MTVYDAAFFNSVLSKKTSIFGLHLWVLIGIFIGTLIVLALLLLSLCLTSRERNRHKNQIRVHKSITDHSQSPPISKEIQEIGKSEPDLHRHVQPEVHVEIGKLENRVVVSDRLSSGESRDAVSETSSFGSGGNVGPEVSHLGWGRWYTLRELEAATNGLCAENVIGEGGYGIVYLGILGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDIGDASPLTWKIRVNIILGAAKGLAYLHEGLEPKVVHRDVKSSNILIDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRKSEEVVDPKLPEKPPSKALKRVMLVALRCVDPDATKRPKMGHVIHMLEAENLLSNDEHRVGKDFSHSIQGHQHENRAVSRQVNHQKDEGTSSNISEGDNDGNIQHSSRWR 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 927919 931614 - Sed0006785.1 Sed12g0162 731118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0162 493 ProSitePatterns Protein kinases ATP-binding region signature. 165 187 IPR017441 GO:0005524(InterPro)
Sed12g0162 493 MobiDBLite consensus disorder prediction 450 493 - -
Sed12g0162 493 FunFam Putative receptor-like serine/threonine-protein kinase 235 445 - -
Sed12g0162 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0162 493 CDD STKc_IRAK 165 431 - -
Sed12g0162 493 SUPERFAMILY Protein kinase-like (PK-like) 137 431 IPR011009 -
Sed12g0162 493 PANTHER OS01G0323000 PROTEIN 8 470 IPR052232 -
Sed12g0162 493 Gene3D Transferase(Phosphotransferase) domain 1 235 447 - -
Sed12g0162 493 MobiDBLite consensus disorder prediction 467 493 - -
Sed12g0162 493 FunFam Probable serine/threonine-protein kinase At1g01540 139 234 - -
Sed12g0162 493 SMART serkin_6 159 430 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0162 493 Pfam Protein tyrosine and serine/threonine kinase 162 429 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0162 493 Gene3D Phosphorylase Kinase; domain 1 142 234 - -
Sed12g0162 493 ProSiteProfiles Protein kinase domain profile. 159 436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0987 Sed-Chr7:7242779 Sed12g0162 Sed-Chr12:927919 2.20E-66 dispersed
Sed10g0650 Sed-Chr10:4431141 Sed12g0162 Sed-Chr12:927919 1.30E-161 dispersed
Sed10g1235 Sed-Chr10:26440288 Sed12g0162 Sed-Chr12:927919 4.50E-165 dispersed
Sed11g0939 Sed-Chr11:23742419 Sed12g0162 Sed-Chr12:927919 5.60E-160 dispersed
Sed12g0162 Sed-Chr12:927919 Sed12g0164 Sed-Chr12:927919 1.60E-212 dispersed
Sed12g0162 Sed-Chr12:927919 Sed12g0163 Sed-Chr12:927919 2.40E-285 tandem
Sed12g0162 Sed-Chr12:927919 Sed02g1659 Sed-Chr2:51870247 1.70E-246 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79954 PF07714 PK_Tyr_Ser-Thr 2.60E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0162 - - - 0.0