Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0163 ATGACTGTTTACGATGCTGCATTTTTCAACTCCGTGCTCTCTAAGAAGACCTCCATCTTCGGCCTTCATCTCTGGGTACTGATAGGAATCTTCATCGGAACCCTAATAGTTCTCGCTCTGCTTCTTCTCTCGCTTTGCCTCACTTCTCGCGAGCGGAATCGCCACAAGAACCAAATCCGTGTTCATAAGTCCATAACCGACCATTCCCAATCTCCTCCCATTTCGAAAGAGATTCAGGAGATCGGGAAATCGGAGCCGGATCTTCACCGCCATGTGCAGCCGGAAGTTCATGTCGAGATCGGAAAGTTGGAGAATCGGGTTGTTGTTTCTGATAGATTGTCCAGTGGGGAGAGTAGAGACGCTGTGAGTGAAACTTCTTCGTTTGGATCTGGCGGTAATGTTGGGCCTGAGGTTTCGCATCTTGGTTGGGGTCGATGGTATACTCTGAGAGAGCTTGAGGCTGCTACTAATGGCTTGTGTGCAGAGAATGTGATTGGAGAAGGTGGATATGGGATTGTGTATTTGGGCATTTTGGGCGATGGTACCAGAATTGCGATCAAGAATCTCTTGAATAACAGGGGACAAGCTGAGAGGGAATTCAAAGTGGAAGTTGAAGCAATTGGACGAGTAAGACACAAGAATCTTGTCAGGTTGCTGGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTCAACAATGGCAATCTAGACCAATGGCTTCATGGCGACATTGGTGATGCAAGCCCCTTGACGTGGAAGATTCGTGTTAACATCATACTTGGAGCAGCAAAGGGATTGGCCTATCTTCATGAGGGTCTTGAACCTAAGGTTGTCCATCGTGATGTAAAATCTAGCAACATACTGATTGATCGTCAATGGAATGCTAAAGTATCTGATTTTGGGCTGGCCAAGCTTCTTTGTTCCGAAAGGAGCTACGTGACGACTCGTGTAATGGGTACATTTGGCTATGTTGCACCTGAGTATGCTTGCACGGGAATGTTGAATGAAAAGAGCGATGTTTATAGCTTTGGAATTCTAATTATGGAGATAATTTCTGGGCGGAGCCCTGTTGATTATAGTAGACCTCAAGGAGAGGTAAATTTGGTGGATTGGTTGAAAGCAATGGTTGGAGACAGAAAATCAGAGGAAGTGGTTGACCCCAAGTTGCCCGAGAAGCCTCCTTCCAAAGCTCTCAAACGTGTTATGCTGGTTGCTCTTCGGTGTGTCGATCCTGATGCTACGAAGAGGCCGAAAATGGGGCATGTCATTCATATGCTTGAGGCAGAAAATTTGCTGTCTAATGATGAACATCGGGTCGGTAAGGATTTCTCTCACTCAATTCAAGGTCATCAACATGAGAATCGAGCCGTTTCAAGACAAGTTAACCATCAGAAAGACGAAGGAACATCTTCTAATATAAGTGAAGGTGACAATGATGGAAACATTCAACATTCAAGTAGGTGGAGATAA 1482 45.34 MTVYDAAFFNSVLSKKTSIFGLHLWVLIGIFIGTLIVLALLLLSLCLTSRERNRHKNQIRVHKSITDHSQSPPISKEIQEIGKSEPDLHRHVQPEVHVEIGKLENRVVVSDRLSSGESRDAVSETSSFGSGGNVGPEVSHLGWGRWYTLRELEAATNGLCAENVIGEGGYGIVYLGILGDGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDIGDASPLTWKIRVNIILGAAKGLAYLHEGLEPKVVHRDVKSSNILIDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMEIISGRSPVDYSRPQGEVNLVDWLKAMVGDRKSEEVVDPKLPEKPPSKALKRVMLVALRCVDPDATKRPKMGHVIHMLEAENLLSNDEHRVGKDFSHSIQGHQHENRAVSRQVNHQKDEGTSSNISEGDNDGNIQHSSRWR 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 927919 931614 - Sed0006785.2 Sed12g0163 731119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0163 493 ProSitePatterns Protein kinases ATP-binding region signature. 165 187 IPR017441 GO:0005524(InterPro)
Sed12g0163 493 MobiDBLite consensus disorder prediction 450 493 - -
Sed12g0163 493 FunFam Putative receptor-like serine/threonine-protein kinase 235 445 - -
Sed12g0163 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0163 493 CDD STKc_IRAK 165 431 - -
Sed12g0163 493 SUPERFAMILY Protein kinase-like (PK-like) 137 431 IPR011009 -
Sed12g0163 493 PANTHER OS01G0323000 PROTEIN 8 470 IPR052232 -
Sed12g0163 493 Gene3D Transferase(Phosphotransferase) domain 1 235 447 - -
Sed12g0163 493 MobiDBLite consensus disorder prediction 467 493 - -
Sed12g0163 493 FunFam Probable serine/threonine-protein kinase At1g01540 139 234 - -
Sed12g0163 493 SMART serkin_6 159 430 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0163 493 Pfam Protein tyrosine and serine/threonine kinase 162 429 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0163 493 Gene3D Phosphorylase Kinase; domain 1 142 234 - -
Sed12g0163 493 ProSiteProfiles Protein kinase domain profile. 159 436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1659 Sed-Chr2:51870247 Sed12g0163 Sed-Chr12:927919 7.60E-247 dispersed
Sed12g0163 Sed-Chr12:927919 Sed06g1839 Sed-Chr6:42810567 2.20E-76 dispersed
Sed12g0162 Sed-Chr12:927919 Sed12g0163 Sed-Chr12:927919 2.40E-285 tandem
Sed12g0163 Sed-Chr12:927919 Sed12g0164 Sed-Chr12:927919 1.60E-212 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79955 PF07714 PK_Tyr_Ser-Thr 2.60E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0163 - - - 0.0