Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0173 ATGGAAGTTGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGCCCTCCGCCGCCGCAGCTCCCTCCTCCGACACTCACTCTGTTTCTTCCAGTTCCAATCACTCTGCCCCTTTTGCTTTAAATAGAAACCCAAAAAACCAAACAAAACATTTGTTTTCTCTTCAAGATCCATTCGAGAAGCCAAATCGTAATTCCAATGAGGAATTGCAAAAGCTTTTCAATCCCTTCTTCCCCAAATCTCAACCCTCTCCGCCGTCGCCGCCGCCACCGCCGGCGAAAATTCTGACCCATCTGCCCAAACAGCTTCCTTCAACCTCTGTTTCTGCTCCAAGATCCAAACGCCGTAAAAATCAATTGAAGAAAGTTTGTCAAGTTCCAGCAGAGTCTCTTTCTTCTGATATTTGGGCTTGGAGAAAATATGGACAAAAACCGATCAAGGGATCTCCATATCCAAGGGGATATTACAGATGCAGCAGCTCAAAGGGTTGCATGGCCCGGAAACAAGTTGAGCGGAACAGATCCGACCCGGGAATGTTCATAGTCACATACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAATTCCCTCGCCGGCTCCACCCGTCAGAAACCCATCTCGCCGCCGCCAGTCGCAGGAGAACCCGAACCTGAAAAACCCGACCCGAAACAGCCCGTTTTCTCGTCGGAAGATCAGAGCACGGTTCCGGCGAGCAAAGAAGAAGAAAAAGAGGAATTATTGGTTGAAGATGAAGAAGATGATGATTTGGGTGTCTCTGATTTGATCGTTAACGATGATTTCTATGTGGGTTTTGAAGAACTCGACAGTCCTAACGCCGACGACTACTTTTCCGATCACTTTCCGGCGAGTTTTGGACTTCCATGGCTGTTCAATAATGCCGCCACCGCCGCTAGTGGGATTTAA 936 49.89 MEVDWDLHAVVRGYSAVPSAAAAPSSDTHSVSSSSNHSAPFALNRNPKNQTKHLFSLQDPFEKPNRNSNEELQKLFNPFFPKSQPSPPSPPPPPAKILTHLPKQLPSTSVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPISPPPVAGEPEPEKPDPKQPVFSSEDQSTVPASKEEEKEELLVEDEEDDDLGVSDLIVNDDFYVGFEELDSPNADDYFSDHFPASFGLPWLFNNAATAASGI 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 990905 992529 + Sed0015288.1 Sed12g0173 731129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0173 311 SMART WRKY_cls 134 194 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0173 311 ProSiteProfiles WRKY domain profile. 129 195 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0173 311 MobiDBLite consensus disorder prediction 81 96 - -
Sed12g0173 311 Pfam WRKY DNA -binding domain 136 193 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0173 311 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 255 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed12g0173 311 MobiDBLite consensus disorder prediction 102 124 - -
Sed12g0173 311 MobiDBLite consensus disorder prediction 21 54 - -
Sed12g0173 311 MobiDBLite consensus disorder prediction 18 54 - -
Sed12g0173 311 SUPERFAMILY WRKY DNA-binding domain 132 195 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0173 311 MobiDBLite consensus disorder prediction 248 263 - -
Sed12g0173 311 MobiDBLite consensus disorder prediction 77 96 - -
Sed12g0173 311 MobiDBLite consensus disorder prediction 192 207 - -
Sed12g0173 311 FunFam WRKY transcription factor 22 118 188 - -
Sed12g0173 311 Gene3D WRKY domain 118 188 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0173 311 MobiDBLite consensus disorder prediction 189 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1915 Sed-Chr1:14212929 Sed12g0173 Sed-Chr12:990905 5.70E-38 dispersed
Sed10g0042 Sed-Chr10:271357 Sed12g0173 Sed-Chr12:990905 4.20E-37 dispersed
Sed12g0173 Sed-Chr12:990905 Sed13g0849 Sed-Chr13:6219991 5.80E-35 dispersed
Sed01g3551 Sed-Chr1:64686107 Sed12g0173 Sed-Chr12:990905 9.30E-39 transposed
Sed12g0173 Sed-Chr12:990905 Sed02g1648 Sed-Chr2:51786030 8.30E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40084 PF03106 WRKY 4.00E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0173 K13425 - csv:101217082 402.905