Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0183 ATGGATTTATCTTATGATATTTGGAAGCAGAATGTGTTGTGTGGTAGTGAAAGCGCATATTGCAAGACGTTGAACCAATTTGGTCCCAGCAGTGTGCTTAGAAGTGGAATTATTGATGCCAAGTTGATTGATGGTTCAAGAGTAGCTTATAAAGTGCATAAGAAGAGAAACAGAATTGTGGCTACTAGCAATTCCAATAATTTGAGTCTGGTTTGCGCTAGCAAGTCTGGTGGTGCTTTGCAATTTTTTAAGCATAAAAGATTCTTGAACTGTAACAAAAAAGATGGAAGGACAGGGATGGTTCATTCAGAGTGTCAAATCAATGATTCTTTACCATTTATTGATGGAAATGGCAGAAATGCGGAATATGTAGATACTGGCGATGAAGGATCCAGTTTTGATGGTGTAGGGTCAGCTGGTTCCAAAGAAACTGATGGAGAAGTAGAAGCGGCAGAAACAGATGCACGGACTGTTGATGAGCTTAGAGAATTGTTGCAAAAGGCTATGACAGAACTGGAAGTTGCGAGACTTAACAGCACCATGTTCGAGGAGAAGGCCCAAAACATATCAGAAGCAGCAATCGCTTTGCAAGATGAAGCAACCCATGCTTGGAATGATGCGAACTCTATGCTCGATTCTTTACAACAGATAGTGAATGAAGAATATGCGGCCAAAGAAGCTGTTCAAAAAGCAACCATGGCTCTTTCATTAGCAGAGGCAAGGCTTCAGGTGGCAATAGAGTCATTGGAGCTGGCCAAAGGAGCAAATGATTCTCCAGATACATCAATAGATAGTGAGGGGGAGATTGATGGTAAGGAAGGGAAAGAAGCGTTGTTAGTTGCTCACGAGGATATTAGAGAATGCCGTGCAAATTTAGAAACTTGTGATGCAGAATTGAAGCGCTTGCAGAGTAAAAAGGAAGAGTTGCAGAAGGAAGTGGACAGGTTGAATGAGTTGGCGGAAAAAGCACAATTAAATGCGTTGAAAGCTGAAGAAGATGTGGCAAATATAATGATTTTGGCTGAGCAAGCTGTTGCTTTTGAACTTGAGGCTGCTCAAAGGGTCAATGATGCTGAAATAACTTTACAGAAAGTGGAGAAATCTTTTTCAAATTCTTTGGTTGACACTTCAGAGACCACACAGGGTTCAAATGTTATTGAAGAGGTTGTCAATGAGGATAATAAGGCAGTTCTAGAAATTTCTGGTGATATTGCTGTTGAAACCGACAGAGATTTGCCACTTAGTGGTGATTCCTTAGCTATCAAATCTCTAGCAGGTAGCTTTTCTGATTCTGAAGGCCCTGACCAATCATACTTCAGTGATAGTGAGAATGGAAAATTGAGTTCAGTCTCTCCAAAGGAGGTTGAATCTGGAGTAGAGAAGTCTATTTTGAGTCAAACAAAGAAGCAGGAAGCACAGAAGGATTTGACCAGAGAAGGCCCACCTTTAAATTCTCCCAAGGCTTCATTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTTTCCTTTACAGTTGACGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTCTTGGATTCCATGAAAAAGCAATTGCCAAAGCTAGTTGTTGGAGTAGTACTGTTCGGAGCAGGGATCTCTATCTTTGCAAATCGAGCCGAAAGGAATTTTCAGATGTATCAGCAGCCTGATGTTATCACCACTAGCACTAATGAAGTTTCCTTGTACACAAAACCTATATTTCAACAATTGAGGAAATTTCCTGAAAAAATGAAAGAGTTAATCTCAAAGCTTCCCCATCAAGAGGTGAATGAAGAGGAGGCTTCACTGTTAGACATGTTATGGCTGTTGCTTGCTAGTGTTATATTTGTGCCAACATTTCAGAAACTTCCTGGAGGAAGTCCTGTCCTGGGGTACTTGGCTGCTGGCATTTTAATTGGGCCATATGGTCTCTCCATAATCCGGCATGTGCATGGAACAAAAGCAATTGCTGAATTTGGAGTTGTTTTTCTCATGTTCAACATTGGCCTTGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTTTTGGCTACAGCTGTGGTGGTTGGCTTGGTTGCTCATATTGTTTGTGGGCAGGCTGGTCCAGCTGCAATTGTCATTGGAAATGGTTTGGCTTTGTCATCCACTGCTGTCGTCCTTCAGGTGTTGCAAGAAAGAGGTGAAAGCACTTCACGGCATGGGCGTGCCACATTTTCTGTCTTACTATTCCAGGATTTGGCTGTTGTGGTATTGCTGATTCTCATACCTCTAATTTCACCTAATTCATCCAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGACTGGCTGCTGTAAAGGCAATAGTGGCCATTTCTGCCATCATAGCTGGTGGGCGCCTGCTTCTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCTGCACACTCCTTGTCATTCTGGGAACAAGTCTACTTACTGCCAGGGCTGGACTATCAATGGCGCTGGGTGCCTTTCTAGCAGGTTTACTACTAGCAGAAACAGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTCTTTCTAACTTTCCAGTCATTATGGGATCTTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCCTTAGTTGGTAGACTTTTCGGTATCTCAATTATATCTGCGTCAAGAGTTGGGCTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGCTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCTCAACTGTCCTCTTTATTGTTTCTTGTTGTGGGAATTTCAATGGCTCTCACACCATGGCTAGCTGCGGGTGGTCAGTTAATTGCTTCTCGTTTTGAGCAGCATGATGTTAGGAGTTTATTACCTGTTGAAAGCGAGACAGACGATTTACAGGATCATATCATTATTTGTGGATTTGGACGAGTTGGTCAGATAATAGCCCAGCTTCTGTCGGAGCGACTGATTCCTTTTGTTGCCCTTGATGTGAGAAGTGATAGAGTGGCCATTGGACGTGCCTTGGACCTTCCTGTGTATTTTGGAGATGCTGGAAGTCGAGAGGTTCTTCATAAAGTTGGTGCTGAAAGGGCATGTGCTGCTGCAATAACACTGGATTCACCGGGTGCAAATTACAGAACAGTTTGGGCTCTGAGCAAGCATTTCCCAAATGTTAAGACCTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTGGAGAAGGCTGGAGCTACTGCGGTGGTTCCTGAGACGTTGGAACCAAGCTTACAGTTGGCTGCTGCCGTTCTTGCTCAGGCTAAACTACCCATGTCAGAGATTGCTGCAACAATCAACGAGTTTAGGTCCCGACATTTATCCGAGCTCACCGAGATATCTGAATCGAGTGGAAGTTCACTCGGATACGGGTTTTCTCGAATCATGAGTAAACCGAAAATTCAATCCTCTGACTCTTCAGATGAGAGCCAAATGACAGAAGGAACACTAGCTATATGA 3633 42.86 MDLSYDIWKQNVLCGSESAYCKTLNQFGPSSVLRSGIIDAKLIDGSRVAYKVHKKRNRIVATSNSNNLSLVCASKSGGALQFFKHKRFLNCNKKDGRTGMVHSECQINDSLPFIDGNGRNAEYVDTGDEGSSFDGVGSAGSKETDGEVEAAETDARTVDELRELLQKAMTELEVARLNSTMFEEKAQNISEAAIALQDEATHAWNDANSMLDSLQQIVNEEYAAKEAVQKATMALSLAEARLQVAIESLELAKGANDSPDTSIDSEGEIDGKEGKEALLVAHEDIRECRANLETCDAELKRLQSKKEELQKEVDRLNELAEKAQLNALKAEEDVANIMILAEQAVAFELEAAQRVNDAEITLQKVEKSFSNSLVDTSETTQGSNVIEEVVNEDNKAVLEISGDIAVETDRDLPLSGDSLAIKSLAGSFSDSEGPDQSYFSDSENGKLSSVSPKEVESGVEKSILSQTKKQEAQKDLTREGPPLNSPKASLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDSMKKQLPKLVVGVVLFGAGISIFANRAERNFQMYQQPDVITTSTNEVSLYTKPIFQQLRKFPEKMKELISKLPHQEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLMFNIGLELSVERLSSMKKYVFGLGSAQVLATAVVVGLVAHIVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSACTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIMGSLGLLIGGKTILVALVGRLFGISIISASRVGLLLAPGGEFAFVALGEAVNQGIMSSQLSSLLFLVVGISMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDSPGANYRTVWALSKHFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTEISESSGSSLGYGFSRIMSKPKIQSSDSSDESQMTEGTLAI 1210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1036950 1050957 + Sed0005198.2 Sed12g0183 731139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0183 1210 ProSiteProfiles RCK N-terminal domain profile. 1014 1136 IPR003148 GO:0006813(InterPro)
Sed12g0183 1210 Pfam TrkA-N domain 1015 1128 IPR003148 GO:0006813(InterPro)
Sed12g0183 1210 Gene3D - 1010 1174 - -
Sed12g0183 1210 Coils Coil 158 178 - -
Sed12g0183 1210 MobiDBLite consensus disorder prediction 426 451 - -
Sed12g0183 1210 MobiDBLite consensus disorder prediction 1190 1210 - -
Sed12g0183 1210 FunFam K(+) efflux antiporter 2 chloroplastic 1010 1174 - -
Sed12g0183 1210 Pfam Sodium/hydrogen exchanger family 616 983 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Sed12g0183 1210 Gene3D - 602 990 IPR038770 -
Sed12g0183 1210 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 322 1208 - GO:0009507(PANTHER)|GO:0015386(PANTHER)|GO:0016020(PANTHER)
Sed12g0183 1210 MobiDBLite consensus disorder prediction 426 489 - -
Sed12g0183 1210 MobiDBLite consensus disorder prediction 125 145 - -
Sed12g0183 1210 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1011 1153 IPR036291 -
Sed12g0183 1210 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 613 893 IPR004771 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)
Sed12g0183 1210 Coils Coil 285 333 - -
Sed12g0183 1210 FunFam K(+) efflux antiporter 2 chloroplastic 602 988 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1642 Sed-Chr2:51736712 Sed12g0183 Sed-Chr12:1036950 0.00E+00 dispersed
Sed12g0183 Sed-Chr12:1036950 Sed12g1770 Sed-Chr12:28822994 1.10E-33 dispersed
Sed12g0182 Sed-Chr12:1036950 Sed12g0183 Sed-Chr12:1036950 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0183 K03455 - csv:101213081 1917.89