Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0199 ATGATGAATTTCGGGGTAAGATTTAGTGACGGTGCTCACGGCGGCGACGGCGGCGGTCTTATGGCCTCTGATGCAATTGCTCAGCCACATCTTGTTACACAATCCTCTTTCCCCAAATCCATGTTTTCTTCCCCACGACTCTCTCTCGCTCTCACGAATATCGACGGGATCGGCGCCGTCGAGATGATTCCGGCGGACGGCGGTTTTCAGGCGAATCCCATGCGGAGAAGCAGAGAGGAAGAGCAAGCAGAGAGCAGATCCGGCAGCGAAAACATGGACGGCGGCGGCGGCGGCGGTTCCGGCGACGAAACGGGCGGCGATAACACAAGGAAGAGGAAACGGTACCACCGTCACACTCCACAACAAATCCAAGAACTCGAAACAATGTTCAAGGAATGTCCTCATCCAGATGAAAAACAACGATTAGATCTAAGCAGAAGACTCAATTTAGAAACAAAACAAGTCAAATTCTGGTTTCAAAATCGCCGCACTCAAATGAAGACTCAATTAGAACGCCACGAGAACACGCTACTGAGACAAGAGAACGACAGGCTCCGAGCGGAGAACATGGCGATTCGCGAGGCGATTTCGAATCCGATCTGCACAAACTGCGGATCAGGCGCTACAATCGGCGAAATGTCAATCGAAGAACAGCACCTCCGAATCGAGAACGCTCGATTGAAGGAGGAGCTGGAGAGAGTGTGTGCGCTGGTGAGGCCGGCGGCGATGTCGCCGCCGAGCTCGTGCTTGGAGTTAGGTGTAGGAAGCAACAACAACAACAACAACAACAATCACAATCACAATGACAATCAGAATCAGAATAACAACAATAACAATATGGATCAGGAATACGGAGGAGTAGTAGTAATGGAGGAGAGATCTGTGTACCTGGAGATGGCGATGGCGGCCATGGATGAGCTTGTGAGGATGGCGGCCATGGAGGATGGAGAAGATCGAGCGTCGCTGTGGAATGGAGGGAAGCTTAATGAGGAAGAGTATTTGAGGTGCTTTAATGGCGGATTTTTTGGGATGAAAGTACCGAATGGATTTGTTAGTGAAGGTTCGAGAGAGAATGGAATCGTCGTCGTCAACAGCTCTGCTCTTCTTCACACTCTAATGGACTCTAACCGGTGGGTGGAGATGTTTCCGAATTTAATCTCGACGGCCGCCACCACCGACGTTATCTCCGGCGGAATGGGGGGAACCAGAAATGGCGCTCTTCAACTGATGCATGCTGAGCTTCAAATTTTGTCTCCCATGGTTCCGGTGAGACATTTGAGCTTCCTCCGTTTCTGTAAGCAGCACGCAGAAGGCGTCTGGGCTGTCGTCGACGTCTCGATCGACGCCATTACCGACACTTCCTCTCCGCCGTGCCGAAGGCTTCCCTCGGGTTGCCTCATCCACGACTTGCCCAATGGCTACTCCAAGGTCACTTGGGTTGAACATTCTCAATATGATGAAAGCCATATCCATGAACTGTACCAGCCTCTCGTTGGCTCGGGGCTCGGCTTTGGTGCCCAACGGTGGATCGCCACCCTCCAACGGCAGTGCGAGTGTTTCGCCATCCTCATCTCCGCCCCTCCTGATCATTCTGGAATGTCGGCGAGTGGGCGGCGGAGCATGGTGAAGCTGGCGCAGCGGATGACGGCGAGCTTCAGCGCGGGCGTGTGCGCGTCGTCGGTGTACAAATGGAACAAGCTCAACATCGGCGAGGGTGTGAGGGTCATGACGAGGCACAGCCTGGACCACCCCGGCGAGCCGCCGGGAACGGTGCTCAGCGCCGCCACGTCGGTGTGGCTGCCGCCGCCGCCGGAGAGAGTGTTTGAGTTCCTGCGCGATGAACGGCTGAGATGCGAGTGGGACATTCTATCCAACGGCGGCCCCATGCAGGAGATGATTCATATCCCCAAAGCTCAGCTACGTCCCGGCAATGCCGTCTCTCTCCTTCAAGCCTCCTCTCTAAATCCGAACCAGAACAGCATGTTGATCCTGCAAGAGACATGCACGGATCCAACGGGGTCGGTTGTGGTGTACGCGCCGGTGGACATTCCGGCGATGCAGGCGGTGATGAGCGGCGGCGACTCGGCGTACGTGGCGCTGCTGCCGTCGGGGTTCGCGGTGGTGCCGGCGGCGTCGAACGGCGGCGGAGGGAGCCTGTTGACGGTGGCGTTTCAGATATTGGTTAACAGTTTGCCGACGGAAAAGTTGACGGTGGAGTCGGTGGAGACGGTGAATAATTTGATATCGTGTACGGTGCAAAAGATTAAAGCGGCTCTTCGGTGTCACGAGACTTGCACGTGA 2301 55.06 MMNFGVRFSDGAHGGDGGGLMASDAIAQPHLVTQSSFPKSMFSSPRLSLALTNIDGIGAVEMIPADGGFQANPMRRSREEEQAESRSGSENMDGGGGGGSGDETGGDNTRKRKRYHRHTPQQIQELETMFKECPHPDEKQRLDLSRRLNLETKQVKFWFQNRRTQMKTQLERHENTLLRQENDRLRAENMAIREAISNPICTNCGSGATIGEMSIEEQHLRIENARLKEELERVCALVRPAAMSPPSSCLELGVGSNNNNNNNNHNHNDNQNQNNNNNNMDQEYGGVVVMEERSVYLEMAMAAMDELVRMAAMEDGEDRASLWNGGKLNEEEYLRCFNGGFFGMKVPNGFVSEGSRENGIVVVNSSALLHTLMDSNRWVEMFPNLISTAATTDVISGGMGGTRNGALQLMHAELQILSPMVPVRHLSFLRFCKQHAEGVWAVVDVSIDAITDTSSPPCRRLPSGCLIHDLPNGYSKVTWVEHSQYDESHIHELYQPLVGSGLGFGAQRWIATLQRQCECFAILISAPPDHSGMSASGRRSMVKLAQRMTASFSAGVCASSVYKWNKLNIGEGVRVMTRHSLDHPGEPPGTVLSAATSVWLPPPPERVFEFLRDERLRCEWDILSNGGPMQEMIHIPKAQLRPGNAVSLLQASSLNPNQNSMLILQETCTDPTGSVVVYAPVDIPAMQAVMSGGDSAYVALLPSGFAVVPAASNGGGGSLLTVAFQILVNSLPTEKLTVESVETVNNLISCTVQKIKAALRCHETCT 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1112182 1119417 - Sed0022163.1 Sed12g0199 731155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0199 766 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 101 761 IPR042160 -
Sed12g0199 766 SMART HOX_1 110 173 IPR001356 GO:0003677(InterPro)
Sed12g0199 766 SMART START_1 298 519 IPR002913 GO:0008289(InterPro)
Sed12g0199 766 MobiDBLite consensus disorder prediction 65 122 - -
Sed12g0199 766 CDD START_ArGLABRA2_like 293 518 - -
Sed12g0199 766 CDD homeodomain 111 169 IPR001356 GO:0003677(InterPro)
Sed12g0199 766 SUPERFAMILY Homeodomain-like 98 169 IPR009057 -
Sed12g0199 766 Coils Coil 210 230 - -
Sed12g0199 766 MobiDBLite consensus disorder prediction 244 281 - -
Sed12g0199 766 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed12g0199 766 SUPERFAMILY Bet v1-like 292 520 - -
Sed12g0199 766 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677(InterPro)
Sed12g0199 766 MobiDBLite consensus disorder prediction 250 281 - -
Sed12g0199 766 Pfam Homeodomain 112 167 IPR001356 GO:0003677(InterPro)
Sed12g0199 766 ProSiteProfiles START domain profile. 289 522 IPR002913 GO:0008289(InterPro)
Sed12g0199 766 FunFam Homeobox-leucine zipper protein HDG1 99 185 - -
Sed12g0199 766 Pfam START domain 302 519 IPR002913 GO:0008289(InterPro)
Sed12g0199 766 MobiDBLite consensus disorder prediction 73 87 - -
Sed12g0199 766 Coils Coil 163 195 - -
Sed12g0199 766 Gene3D - 97 170 - -
Sed12g0199 766 SUPERFAMILY Bet v1-like 560 756 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0199 Sed-Chr12:1112182 Sed13g0162 Sed-Chr13:1025312 6.80E-194 dispersed
Sed12g0199 Sed-Chr12:1112182 Sed12g0200 Sed-Chr12:1114412 0.00E+00 tandem
Sed12g0199 Sed-Chr12:1112182 Sed04g2211 Sed-Chr4:36004141 3.90E-250 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40090 PF01852 START 7.40E-42 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0199 K09338 - csv:101222248 940.258