Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0200 ATGATGAATTTCGGGGTAAGATTTAGTGACGGTGCTCACGGCGGCGACGGCGGCGGTCTTATGGCCTCTGATGCAATTGCTCAGCCACATCTTGTTACACAATCCTCTTTCCCCAAATCCATGTTTTCTTCCCCACGACTCTCTCTCGCTCTCACGAATATCGACGGGATCGGCGCCGTCGAGATGATTCCGGCGGACGGCGGTTTTCAGGCGAATCCCATGCGGAGAAGCAGAGAGGAAGAGCAAGCAGAGAGCAGATCCGGCAGCGAAAACATGGACGGCGGCGGCGGCGGCGGTTCCGGCGACGAAACGGGCGGCGATAACACAAGGAAGAGGAAACGGTACCACCGTCACACTCCACAACAAATCCAAGAACTCGAAACAATGTTCAAGGAATGTCCTCATCCAGATGAAAAACAACGATTAGATCTAAGCAGAAGACTCAATTTAGAAACAAAACAAGTCAAATTCTGGTTTCAAAATCGCCGCACTCAAATGAAGACTCAATTAGAACGCCACGAGAACACGCTACTGAGACAAGAGAACGACAGGCTCCGAGCGGAGAACATGGCGATTCGCGAGGCGATTTCGAATCCGATCTGCACAAACTGCGGATCAGGCGCTACAATCGGCGAAATGTCAATCGAAGAACAGCACCTCCGAATCGAGAACGCTCGATTGAAGGAGGAGCTGGAGAGAGTGTGTGCGCTGGTGAGGCCGGCGGCGATGTCGCCGCCGAGCTCGTGCTTGGAGTTAGGTGTAGGAAGCAACAACAACAACAACAACAACAATCACAATCACAATGACAATCAGAATCAGAATAACAACAATAACAATATGGATCAGGAATACGGAGGAGTAGTAGTAATGGAGGAGAGATCTGTGTACCTGGAGATGGCGATGGCGGCCATGGATGAGCTTGTGAGGATGGCGGCCATGGAGGATGGAGAAGATCGAGCGTCGCTGTGGAATGGAGGGAAGCTTAATGAGGAAGAGTATTTGAGGTGCTTTAATGGCGGATTTTTTGGGATGAAAGTACCGAATGGATTTGTTAGTGAAGGTTCGAGAGAGAATGGAATCGTCGTCGTCAACAGCTCTGCTCTTCTTCACACTCTAATGGACTCTAACCGGTGGGTGGAGATGTTTCCGAATTTAATCTCGACGGCCGCCACCACCGACGTTATCTCCGGCGGAATGGGGGGAACCAGAAATGGCGCTCTTCAACTGATGCATGCTGAGCTTCAAATTTTGTCTCCCATGGTTCCGGTGAGACATTTGAGCTTCCTCCGTTTCTGTAAGCAGCACGCAGAAGGCGTCTGGGCTGTCGTCGACGTCTCGATCGACGCCATTACCGACACTTCCTCTCCGCCGTGCCGAAGGCTTCCCTCGGGTTGCCTCATCCACGACTTGCCCAATGGCTACTCCAAGGTCACTTGGGTTGAACATTCTCAATATGATGAAAGCCATATCCATGAACTGTACCAGCCTCTCGTTGGCTCGGGGCTCGGCTTTGGTGCCCAACGGTGGATCGCCACCCTCCAACGGCAGTGCGAGTGTTTCGCCATCCTCATCTCCGCCCCTCCTGATCATTCTGGAATGTCGGCGAGTGGGCGGCGGAGCATGGTGAAGCTGGCGCAGCGGATGACGGCGAGCTTCAGCGCGGGCGTGTGCGCGTCGTCGGTGTACAAATGGAACAAGCTCAACATCGGCGAGGGTGTGAGGGTCATGACGAGGCACAGCCTGGACCACCCCGGCGAGCCGCCGGGAACGGTGCTCAGCGCCGCCACGTCGGTGTGGCTGCCGCCGCCGCCGGAGAGAGTGTTTGAGTTCCTGCGCGATGAACGGCTGAGATGCGAGTGGGACATTCTATCCAACGGCGGCCCCATGCAGGAGATGATTCATATCCCCAAAGCTCAGCTACGTCCCGGCAATGCCGTCTCTCTCCTTCAAGCCTCCGTACTTTCTCTCTCTTTCTAA 1977 54.22 MMNFGVRFSDGAHGGDGGGLMASDAIAQPHLVTQSSFPKSMFSSPRLSLALTNIDGIGAVEMIPADGGFQANPMRRSREEEQAESRSGSENMDGGGGGGSGDETGGDNTRKRKRYHRHTPQQIQELETMFKECPHPDEKQRLDLSRRLNLETKQVKFWFQNRRTQMKTQLERHENTLLRQENDRLRAENMAIREAISNPICTNCGSGATIGEMSIEEQHLRIENARLKEELERVCALVRPAAMSPPSSCLELGVGSNNNNNNNNHNHNDNQNQNNNNNNMDQEYGGVVVMEERSVYLEMAMAAMDELVRMAAMEDGEDRASLWNGGKLNEEEYLRCFNGGFFGMKVPNGFVSEGSRENGIVVVNSSALLHTLMDSNRWVEMFPNLISTAATTDVISGGMGGTRNGALQLMHAELQILSPMVPVRHLSFLRFCKQHAEGVWAVVDVSIDAITDTSSPPCRRLPSGCLIHDLPNGYSKVTWVEHSQYDESHIHELYQPLVGSGLGFGAQRWIATLQRQCECFAILISAPPDHSGMSASGRRSMVKLAQRMTASFSAGVCASSVYKWNKLNIGEGVRVMTRHSLDHPGEPPGTVLSAATSVWLPPPPERVFEFLRDERLRCEWDILSNGGPMQEMIHIPKAQLRPGNAVSLLQASVLSLSF 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1114412 1119417 - Sed0022163.2 Sed12g0200 731156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0200 658 SMART HOX_1 110 173 IPR001356 GO:0003677(InterPro)
Sed12g0200 658 SMART START_1 298 519 IPR002913 GO:0008289(InterPro)
Sed12g0200 658 MobiDBLite consensus disorder prediction 65 122 - -
Sed12g0200 658 CDD START_ArGLABRA2_like 293 518 - -
Sed12g0200 658 CDD homeodomain 111 169 IPR001356 GO:0003677(InterPro)
Sed12g0200 658 Gene3D - 97 170 - -
Sed12g0200 658 Coils Coil 210 230 - -
Sed12g0200 658 FunFam Homeobox-leucine zipper protein HDG1 99 185 - -
Sed12g0200 658 SUPERFAMILY Bet v1-like 560 633 - -
Sed12g0200 658 MobiDBLite consensus disorder prediction 244 281 - -
Sed12g0200 658 ProSitePatterns 'Homeobox' domain signature. 144 167 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed12g0200 658 ProSiteProfiles 'Homeobox' domain profile. 109 169 IPR001356 GO:0003677(InterPro)
Sed12g0200 658 MobiDBLite consensus disorder prediction 250 281 - -
Sed12g0200 658 ProSiteProfiles START domain profile. 289 522 IPR002913 GO:0008289(InterPro)
Sed12g0200 658 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 101 652 IPR042160 -
Sed12g0200 658 MobiDBLite consensus disorder prediction 73 87 - -
Sed12g0200 658 SUPERFAMILY Bet v1-like 292 520 - -
Sed12g0200 658 Coils Coil 163 195 - -
Sed12g0200 658 SUPERFAMILY Homeodomain-like 98 169 IPR009057 -
Sed12g0200 658 Pfam START domain 302 519 IPR002913 GO:0008289(InterPro)
Sed12g0200 658 Pfam Homeodomain 112 167 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0200 Sed-Chr12:1114412 Sed13g0162 Sed-Chr13:1025312 6.30E-156 dispersed
Sed12g0199 Sed-Chr12:1112182 Sed12g0200 Sed-Chr12:1114412 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40091 PF01852 START 5.50E-42 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0200 K09338 - mdm:103448231 776.933