Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0222 ATGGTTCGAGGAAAAACTGAGATGAGGCGAATCGAGAACGCTACGAGCCGGCAAGTAACGTTTTCGAAACGGCGTAATGGGTTGCTGAAAAAAGCCTTTGAACTTTCAGTTCTTTGTGAATCTGAAGTGGCTCTCATCATTTTTTCATCTACCGGGAAACTTTACGAATTTGCTAGTGCAAGTATGAAGACGACGGTGGAGCGATTTCTAAGGCATACAAGGGAAACCAATCATCTTCAACATCCTTTACCTGATCATCACCATAATTTACAAGCTGTTCAGCATGAAGCTGGAAGTTTGTTAAAGGAAATAGAGTCACTTGAAGTTTCAAAGAGAAAATTGATGGGAGAAGGTTTGGGAACAAGCTCTTATGATGAACTTCAACAAATAGAAGAGCAGCTAGAAAAGAGCTTAGCCCATGTTAGGGCTAGAAAGCACGAGGTTTACAAGGAACAGATTGAACAACTAGAAGAAAAGGAGAAGTATTTGGCAGCTGAAAATGCAAAGCTAGCTAAAAAGTATTTAGTTCAACTTGAGCCTCAACAATCACCACCTCAACTAGTAGAGGTTTCACCGAGTGTCGAAACCAGCTCGATTTCGGACGTCGAAACAGATTTGTTTATTGGACCTCCCAAGTCGAAATCGAAGTGA 651 41.32 MVRGKTEMRRIENATSRQVTFSKRRNGLLKKAFELSVLCESEVALIIFSSTGKLYEFASASMKTTVERFLRHTRETNHLQHPLPDHHHNLQAVQHEAGSLLKEIESLEVSKRKLMGEGLGTSSYDELQQIEEQLEKSLAHVRARKHEVYKEQIEQLEEKEKYLAAENAKLAKKYLVQLEPQQSPPQLVEVSPSVETSSISDVETDLFIGPPKSKSK 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1232327 1244087 + Sed0019435.2 Sed12g0222 731178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0222 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0222 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0222 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0222 216 Coils Coil 90 110 - -
Sed12g0222 216 ProSiteProfiles K-box domain profile. 90 184 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed12g0222 216 Coils Coil 146 173 - -
Sed12g0222 216 MobiDBLite consensus disorder prediction 181 203 - -
Sed12g0222 216 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0222 216 Pfam K-box region 86 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed12g0222 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 185 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed12g0222 216 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Sed12g0222 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0222 216 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0222 216 Gene3D - 14 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0222 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0222 216 MobiDBLite consensus disorder prediction 181 216 - -
Sed12g0222 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0222 216 Coils Coil 124 144 - -
Sed12g0222 216 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1621 Sed-Chr2:51615803 Sed12g0222 Sed-Chr12:1232327 1.90E-80 dispersed
Sed09g0102 Sed-Chr9:760950 Sed12g0222 Sed-Chr12:1232327 3.50E-55 dispersed
Sed12g0222 Sed-Chr12:1232327 Sed12g0224 Sed-Chr12:1238005 7.00E-112 dispersed
Sed12g0222 Sed-Chr12:1232327 Sed12g0223 Sed-Chr12:1232327 1.30E-73 tandem
Sed01g3933 Sed-Chr1:68479941 Sed12g0222 Sed-Chr12:1232327 1.70E-46 wgd
Sed12g0222 Sed-Chr12:1232327 Sed02g1617 Sed-Chr2:51615464 4.10E-80 wgd
Sed12g0222 Sed-Chr12:1232327 Sed04g2188 Sed-Chr4:35885375 1.80E-30 wgd
Sed12g0222 Sed-Chr12:1232327 Sed05g0850 Sed-Chr5:6774610 1.10E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40093 PF01486 K-box 6.10E-25 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0222 - - - 0.0