Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0224 ATGGTTCGAGGAAAAACTGAGATGAGGCGAATCGAGAACGCTACGAGCCGGCAAGTAACGTTTTCGAAACGGCGTAATGGGTTGCTGAAAAAAGCCTTTGAACTTTCAGTTCTTTGTGAATCTGAAGTGGCTCTCATCATTTTTTCATCTACCGGGAAACTTTACGAATTTGCTAGTGCAAGTATGAAGACGACGGTGGAGCGATTTCTAAGGCATACAAGGGAAACCAATCATCTTCAACATCCTTTACCTGATCATCACCATAATTTACAAGCTGTTCAGCATGAAGCTGGAAGTTTGTTAAAGGAAATAGAGTCACTTGAAGTTTCAAAGAGAAAATTGATGGGAGAAGGTTTGGGAACAAGCTCTTATGATGAACTTCAACAAATAGAAGAGCAGCTAGAAAAGAGCTTAGCCCATGTTAGGGCTAGAAAGCACGAGGTTTACAAGGAACAGATTGAACAACTAGAAGAAAAGGAGAAGTATTTGGCAGCTGAAAATGCAAAGCTAGCTAAAAAGTATTTAGTTCAACTTGAGCCTCAACAATCACCACCTCAACTAGTAGAGGTTTCACCGAGTGTCGAAACCAGCTCGATTTCGGACGTCGAAACAGATTTGTTTATTGGACCTCCCAAGTCGAAATCGAAGTGA 651 41.32 MVRGKTEMRRIENATSRQVTFSKRRNGLLKKAFELSVLCESEVALIIFSSTGKLYEFASASMKTTVERFLRHTRETNHLQHPLPDHHHNLQAVQHEAGSLLKEIESLEVSKRKLMGEGLGTSSYDELQQIEEQLEKSLAHVRARKHEVYKEQIEQLEEKEKYLAAENAKLAKKYLVQLEPQQSPPQLVEVSPSVETSSISDVETDLFIGPPKSKSK 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1238005 1244087 + Sed0019435.1 Sed12g0224 731180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0224 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0224 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0224 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0224 216 Coils Coil 90 110 - -
Sed12g0224 216 ProSiteProfiles K-box domain profile. 90 184 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed12g0224 216 Coils Coil 146 173 - -
Sed12g0224 216 MobiDBLite consensus disorder prediction 181 203 - -
Sed12g0224 216 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0224 216 Pfam K-box region 86 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed12g0224 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 185 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed12g0224 216 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Sed12g0224 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0224 216 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0224 216 Gene3D - 14 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0224 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0224 216 MobiDBLite consensus disorder prediction 181 216 - -
Sed12g0224 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed12g0224 216 Coils Coil 124 144 - -
Sed12g0224 216 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0222 Sed-Chr12:1232327 Sed12g0224 Sed-Chr12:1238005 7.00E-112 dispersed
Sed12g0224 Sed-Chr12:1238005 Sed13g0185 Sed-Chr13:1200741 1.10E-35 dispersed
Sed12g0223 Sed-Chr12:1232327 Sed12g0224 Sed-Chr12:1238005 1.10E-74 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40095 PF01486 K-box 6.10E-25 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0224 - - - 0.0