Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0234 ATGGAGATCAATCCCGCCGCCGTCGTGGTCGCCACCACCACCACCACCACCATCCCGCCGGAGAAACGGAACCGCTCCATCTTCGATATCCCGCCGGACTTCTTCGATTCCTGCAAACTCCTCCGTTCTCCACACTCATACACCGTATCAACCAGCGGCAGCTACAAGGGCAGCTCAAGCGCTGAAAACTCAGTCGATTCGGAGCAGAACTGTAGGGATTTCAAAGAAAGCTCGGTCGTCCATAGATTGACCTGCAACACATGCAAGGACGAGTTCGAATCCCTGCTCGACCAGCGCTCGCACTTCAAATCCGACCTCCATCGCTTCAATGTGAAACTAAGCATTGCTGGAAAGAACATTGTTAAGGAGGATGATTTTAATGAGCTGACATCTGATTCTTTCCGAGACTTTGATGTGTCAAGTATTTCTGGATCAGAGGATGAAGCAGAGAAGGAGATTTACTCTCGAAATGAAGGGTCTAAGGGAACCAGTGAGAATGTGAATAAGAAGAGGTTGTTTGTTCATCTTCAAACAGGAAAAAGAGTTTCGGTTTGGAAGTGTTTGCTCACAAATGAGTGGGATGATATTTCATATGAAGACGATGAAACATCATTCAATGGTAATGTAGGTCGTGTGCAGTACCTTAGAGAGAATGAAGTCGTAGCGAGATTGAAATATTTGAATCACGAGCCAAGAGATGGTACCCATTTGCGGATAGTGTTACTTGCAAGTGGTGGACACTTTGCCGGTTGTGTTTTTGACGGGAGCTCGGTTGTAGCTCATAAAACCTTTCACAGATATGTGGTGAGAGCCAAATCTGGAAAGAAGCAATCATCAAAAGATGCAGGAGGTGGCAAAACAATTAGTTCAGCCGGGGCCTCACTTCGTCGTCATAATGAACAGGCATTGAAGAAGGAAATTCAAGATCTCCTTGCTTCTTGGAAGTCCTATTTTAATGCTTCATCTTGCGTCTATATTTATGCTCCTTCGAACAACCGACAATTGCTTTTTAATGGGGGCAAGCCGTATTTTAGTGATCAACACTCTGCTGTTCGGAATATTCCTTTGACTGTTCGAAGGCCTACATTAAAAGAAGCCCGGCTTGTTTATGAACAATTGGTGCAAGTAGTGTATGAGGTAGATGAGAAGGAAACATTGTCCACCAGTGAGCACGATTCACTGTTAAGTGCAGTTACAACAGACAGTGCCACCCAAGATAAAAGTGAACATAATATCATTGGAGAATTGGAAAAGGATGCTTGTACACATCATGAAGAATCTATTGAACACCCTAAAACTAGTGAGAGCGAAAGCGAAGTTATTTGTAAAGCTACACCTTTGCATGAAGCATCTCTATCTGGAAATGCAGATAAGGTCTTGGAACTCCTTGAACAAGGTCTCGATCCTTGCATCAAAGACGAAAGAGGACGTACTCCTTACATGCTAGCAACCGAGAAGGAAGTTCGGAATAACTTCAGAAGGTTCATGGCTTCAAACCTTGATAAGTGGGATTGGATTGCTGCTAAGGTGCCCAGTGCACTAACGAAGGAAATGGAGGAATCTCAAGCTGCTAAGCAGGTTACTTAA 1587 44.42 MEINPAAVVVATTTTTTIPPEKRNRSIFDIPPDFFDSCKLLRSPHSYTVSTSGSYKGSSSAENSVDSEQNCRDFKESSVVHRLTCNTCKDEFESLLDQRSHFKSDLHRFNVKLSIAGKNIVKEDDFNELTSDSFRDFDVSSISGSEDEAEKEIYSRNEGSKGTSENVNKKRLFVHLQTGKRVSVWKCLLTNEWDDISYEDDETSFNGNVGRVQYLRENEVVARLKYLNHEPRDGTHLRIVLLASGGHFAGCVFDGSSVVAHKTFHRYVVRAKSGKKQSSKDAGGGKTISSAGASLRRHNEQALKKEIQDLLASWKSYFNASSCVYIYAPSNNRQLLFNGGKPYFSDQHSAVRNIPLTVRRPTLKEARLVYEQLVQVVYEVDEKETLSTSEHDSLLSAVTTDSATQDKSEHNIIGELEKDACTHHEESIEHPKTSESESEVICKATPLHEASLSGNADKVLELLEQGLDPCIKDERGRTPYMLATEKEVRNNFRRFMASNLDKWDWIAAKVPSALTKEMEESQAAKQVT 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1323266 1329217 + Sed0020963.2 Sed12g0234 731190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0234 528 Pfam Bacteroidetes VLRF1 release factor 239 376 IPR041175 -
Sed12g0234 528 Gene3D - 399 510 IPR036770 -
Sed12g0234 528 MobiDBLite consensus disorder prediction 49 68 - -
Sed12g0234 528 SUPERFAMILY Ankyrin repeat 443 491 IPR036770 -
Sed12g0234 528 ProSiteProfiles Ankyrin repeat profile. 442 474 IPR002110 GO:0005515(InterPro)
Sed12g0234 528 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 526 IPR047139 GO:0030433(PANTHER)
Sed12g0234 528 MobiDBLite consensus disorder prediction 49 67 - -
Sed12g0234 528 ProSitePatterns Zinc finger C2H2 type domain signature. 85 107 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0233 Sed-Chr12:1323266 Sed12g0234 Sed-Chr12:1323266 5.60E-293 tandem
Sed12g0234 Sed-Chr12:1323266 Sed12g0235 Sed-Chr12:1323266 8.10E-295 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0234 K26089 - csv:101216211 839.721