Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0236 ATGTCTGTTACTTTGCACACAAATCTCGGCGACATCAAGTGCGAGATTTCTTGCGACGAAGTCCCCAAATCTGCCGAGAACTTTTTGGCACTATGTGCTAGTGGCTACTATGATGGAACCATATTTCACCGAAATATCAAAGGTTTTATGATACAAGGCGGTGATCCAACAGGCACGGGAAAAGGGGGAACCAGCATATGGGGCAAAAAGTTCAACGACGAGATACGAGAATCGCTCAAGCACAATGCAAGAGGTATATTATCAATGGCTAATAGTGGAGCAAATACAAATGGAAGCCAATTTTTCATAACTTATGCAAAGCAGCCACATCTGAATGGATTATACACTGTGTTCGGTAGAGTCATTCATGGGTTTGAAGTACTTGATATCATGGAAAAGACTCAAACTGGAACCGGAGATCGTCCTCTTGCGGAGATCAGGCTCAATCGGGTGACGATACATGCCAATCCCCTTGCAGGCTAA 483 44.1 MSVTLHTNLGDIKCEISCDEVPKSAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGTGDRPLAEIRLNRVTIHANPLAG 160
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 1330355 1334296 + Sed0021116.1 Sed12g0236 731192
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0236 160 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Sed12g0236 160 FunFam Peptidyl-prolyl cis-trans isomerase 1 160 - -
Sed12g0236 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed12g0236 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed12g0236 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed12g0236 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed12g0236 160 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed12g0236 160 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 153 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed12g0236 160 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 152 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed12g0236 160 SUPERFAMILY Cyclophilin-like 1 157 IPR029000 -
Sed12g0236 160 PIRSF Peptidylpro_ismrse 1 157 IPR024936 GO:0003755(InterPro)
Sed12g0236 160 CDD Cyclophilin_PPIL3_like 1 153 - -
Sed12g0236 160 Gene3D - 1 160 IPR029000 -
Sed12g0236 160 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 150 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1888 Sed-Chr3:12794302 Sed12g0236 Sed-Chr12:1330355 1.50E-42 dispersed
Sed03g1889 Sed-Chr3:12794302 Sed12g0236 Sed-Chr12:1330355 1.50E-42 dispersed
Sed10g0720 Sed-Chr10:5031274 Sed12g0236 Sed-Chr12:1330355 8.00E-49 dispersed
Sed10g0721 Sed-Chr10:5031274 Sed12g0236 Sed-Chr12:1330355 7.30E-49 dispersed
Sed11g1520 Sed-Chr11:30831087 Sed12g0236 Sed-Chr12:1330355 4.20E-28 dispersed
Sed12g0236 Sed-Chr12:1330355 Sed13g1879 Sed-Chr13:23782727 1.10E-29 dispersed
Sed12g0236 Sed-Chr12:1330355 Sed05g3656 Sed-Chr5:44761409 1.50E-31 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0236 K12734 - csv:101211474 320.472