Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed12g0236 | ATGTCTGTTACTTTGCACACAAATCTCGGCGACATCAAGTGCGAGATTTCTTGCGACGAAGTCCCCAAATCTGCCGAGAACTTTTTGGCACTATGTGCTAGTGGCTACTATGATGGAACCATATTTCACCGAAATATCAAAGGTTTTATGATACAAGGCGGTGATCCAACAGGCACGGGAAAAGGGGGAACCAGCATATGGGGCAAAAAGTTCAACGACGAGATACGAGAATCGCTCAAGCACAATGCAAGAGGTATATTATCAATGGCTAATAGTGGAGCAAATACAAATGGAAGCCAATTTTTCATAACTTATGCAAAGCAGCCACATCTGAATGGATTATACACTGTGTTCGGTAGAGTCATTCATGGGTTTGAAGTACTTGATATCATGGAAAAGACTCAAACTGGAACCGGAGATCGTCCTCTTGCGGAGATCAGGCTCAATCGGGTGACGATACATGCCAATCCCCTTGCAGGCTAA | 483 | 44.1 | MSVTLHTNLGDIKCEISCDEVPKSAENFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGTGDRPLAEIRLNRVTIHANPLAG | 160 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1330355 | 1334296 | + | Sed0021116.1 | Sed12g0236 | 731192 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed12g0236 | 160 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 37 | 54 | IPR020892 | GO:0003755(InterPro)|GO:0006457(InterPro) | |
| Sed12g0236 | 160 | FunFam | Peptidyl-prolyl cis-trans isomerase | 1 | 160 | - | - | |
| Sed12g0236 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 42 | 54 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed12g0236 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 100 | 112 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed12g0236 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 113 | 128 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed12g0236 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 85 | 100 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed12g0236 | 160 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 16 | 31 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed12g0236 | 160 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 6 | 153 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed12g0236 | 160 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 3 | 152 | IPR002130 | GO:0000413(InterPro)|GO:0003755(InterPro) | |
| Sed12g0236 | 160 | SUPERFAMILY | Cyclophilin-like | 1 | 157 | IPR029000 | - | |
| Sed12g0236 | 160 | PIRSF | Peptidylpro_ismrse | 1 | 157 | IPR024936 | GO:0003755(InterPro) | |
| Sed12g0236 | 160 | CDD | Cyclophilin_PPIL3_like | 1 | 153 | - | - | |
| Sed12g0236 | 160 | Gene3D | - | 1 | 160 | IPR029000 | - | |
| Sed12g0236 | 160 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED | 2 | 150 | IPR044666 | GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g1888 | Sed-Chr3:12794302 | Sed12g0236 | Sed-Chr12:1330355 | 1.50E-42 | dispersed | |
| Sed03g1889 | Sed-Chr3:12794302 | Sed12g0236 | Sed-Chr12:1330355 | 1.50E-42 | dispersed | |
| Sed10g0720 | Sed-Chr10:5031274 | Sed12g0236 | Sed-Chr12:1330355 | 8.00E-49 | dispersed | |
| Sed10g0721 | Sed-Chr10:5031274 | Sed12g0236 | Sed-Chr12:1330355 | 7.30E-49 | dispersed | |
| Sed11g1520 | Sed-Chr11:30831087 | Sed12g0236 | Sed-Chr12:1330355 | 4.20E-28 | dispersed | |
| Sed12g0236 | Sed-Chr12:1330355 | Sed13g1879 | Sed-Chr13:23782727 | 1.10E-29 | dispersed | |
| Sed12g0236 | Sed-Chr12:1330355 | Sed05g3656 | Sed-Chr5:44761409 | 1.50E-31 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed12g0236 | K12734 | - | csv:101211474 | 320.472 |