Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0242 ATGGAAGAAAGAGAGGCTAGAAGTGTAGGAGTAACAGTGATCGGAGCCGAAGCTCCGTCGGCTTATCACGTGGCTCCGAGAATCGAAAACCCACCGCCGGGCAGCGGCAATGGTTCCCCCACTGTCGCGGCCTCTCCGGTCAGCGTGGGACTGCCCGGAAATGGAACCACAGACAAAAAGAAGCGGGGCAGACCTAGAAAGTATGGCCCCGATGGATTAAATGGCCCGGCATTGTCGCCATTTCCGCTTTCTTCCTCAGGTCCAGCGGCCGGCGGCTTTTCGATCACCAAGCGGGGGAAGAGCCGGCTTGGTGGCAGCGTTGGCTCCGAGTTCAAGCATCAAAAGAAAATGGGGATGGGAGTTTTGCTAGGCGAATGGAATGGGAGTTCTGTTGGCGGTACGAATTTCATGCCTCATATCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCTCAACAAGGTCCTCGAGCAATCTGCATTCTTTCTGCCATTGGAGTAATTTCAAATGTCACACTTCGGCATCTCGATTCTTCGGGTGGTACTTTAACATATGAGGGTCGTTTTGAGATACTTAACTTGACTGGATCATTCAAGCCTACTGAAAATCAAGGAACTAGAAGCATGACGGGTGGGATGAGCGTCTCCTTGGCAGGCCCCGACGGTCGTATTGTCGGGGGAGGGGTAGCTGGTTTACTCGTAGCTGCAAGCCCGATACAGATTGTGTTAGCGAGTTTTCTACCAATTAGCCAACAAGAGCAGAAAGTAAAGAAACAGAAGCCTGAGTCGGTACCAACTGCAGCACTGGCTGCTGTTCCGAGCACAGAACCAGCCACCACCATGCCAAGTTCCAATGCCGATACTGACGACAGTTTAAATGGTAACGGCCTGCAAAATCCCGGGTCGATAAATCCAACGACTTTCGCCCCTGCTACTTTCCAGAGAGACAATTGGGGAGTCAATACTGCTGTGCAATCCTTGCAGGAACCGAGAAATTTTGTTACCGACATCAATCAAACGTTCCCGGGCTAA 1047 51.29 MEEREARSVGVTVIGAEAPSAYHVAPRIENPPPGSGNGSPTVAASPVSVGLPGNGTTDKKKRGRPRKYGPDGLNGPALSPFPLSSSGPAAGGFSITKRGKSRLGGSVGSEFKHQKKMGMGVLLGEWNGSSVGGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSAIGVISNVTLRHLDSSGGTLTYEGRFEILNLTGSFKPTENQGTRSMTGGMSVSLAGPDGRIVGGGVAGLLVAASPIQIVLASFLPISQQEQKVKKQKPESVPTAALAAVPSTEPATTMPSSNADTDDSLNGNGLQNPGSINPTTFAPATFQRDNWGVNTAVQSLQEPRNFVTDINQTFPG 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1406829 1411905 + Sed0019723.1 Sed12g0242 731198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0242 348 FunFam AT-hook motif nuclear-localized protein 1-like 138 269 - -
Sed12g0242 348 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 251 IPR005175 -
Sed12g0242 348 MobiDBLite consensus disorder prediction 281 315 - -
Sed12g0242 348 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 14 299 IPR039605 GO:0003680(InterPro)
Sed12g0242 348 MobiDBLite consensus disorder prediction 261 315 - -
Sed12g0242 348 CDD DUF296 138 251 IPR005175 -
Sed12g0242 348 ProSiteProfiles PPC domain profile profile. 133 277 IPR005175 -
Sed12g0242 348 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 257 - -
Sed12g0242 348 MobiDBLite consensus disorder prediction 1 108 - -
Sed12g0242 348 Gene3D - 138 268 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0750 Sed-Chr4:6072630 Sed12g0242 Sed-Chr12:1406829 1.40E-70 dispersed
Sed07g1100 Sed-Chr7:8068997 Sed12g0242 Sed-Chr12:1406829 3.20E-58 dispersed
Sed09g0064 Sed-Chr9:499521 Sed12g0242 Sed-Chr12:1406829 3.30E-47 dispersed
Sed12g0242 Sed-Chr12:1406829 Sed13g0195 Sed-Chr13:1277102 8.80E-56 dispersed
Sed01g3955 Sed-Chr1:68666267 Sed12g0242 Sed-Chr12:1406829 1.60E-17 wgd
Sed12g0242 Sed-Chr12:1406829 Sed02g1587 Sed-Chr2:51429520 1.20E-140 wgd
Sed12g0242 Sed-Chr12:1406829 Sed04g2176 Sed-Chr4:35816589 1.20E-17 wgd
Sed12g0242 Sed-Chr12:1406829 Sed05g0863 Sed-Chr5:6958647 5.00E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0242 - - - 0.0