Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0245 ATGGAAATCGAAGCTCAGCCTGATCAGAAGATCTCCGCCGATTCACCGTCGTCTTCGAAGCTCATTCTTCATTCTTTCTGGCAGAGTTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTTAATCTAGCGAGAGGAGAGCAATTAAGTCCAGATTTTGAGCGGTTAAATCCTCTCAAATATGTTCCTGTATTAGTAGATGGTCCTGTGGTAGTTTCGGACTCTTACGCGATTTTGCTGTATTTGGAAGAGAAATATCCACAGAAGGCGTTGCTGCCTGCTGATCTTCGTTTGAAATCTCTTAATCTGCAAGTAGCAAGTATTGTCAGCTCAAGCATACAGCCTCTTCTTATGCTGGGATTGCTGAAAACTATCGAGGAAAATTTTGGTCCAGTAGAGAAACTGTCGTGGGCTCAGACTAATATAGAAAAAGGTTTCAATGCTCTTGAGAAACTGCTGAAGGATTTTTCTGGCCGATATGCCTTGGGCGATGAAGTATTTATGGCTGATGTATTTTTAGCCCCCCAAGTTTCGATTGCGTTTGAGAGGTTCAACATTGACACGTCCAAGTTTCCTACTTTAGCGAGGATTTATGAATCTTACAAGTCGTTACCAGAATTCCAGGCCTCCTCACCAGAAACGCAGCCCGATGCCCTAAATTAG 693 44.16 MEIEAQPDQKISADSPSSSKLILHSFWQSSCSWRVRFALNLKGLSYEYRAVNLARGEQLSPDFERLNPLKYVPVLVDGPVVVSDSYAILLYLEEKYPQKALLPADLRLKSLNLQVASIVSSSIQPLLMLGLLKTIEENFGPVEKLSWAQTNIEKGFNALEKLLKDFSGRYALGDEVFMADVFLAPQVSIAFERFNIDTSKFPTLARIYESYKSLPEFQASSPETQPDALN 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1418675 1422858 + Sed0015749.2 Sed12g0245 731201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0245 230 FunFam Glutathione S-transferase Z1 19 103 - -
Sed12g0245 230 SUPERFAMILY GST C-terminal domain-like 101 227 IPR036282 -
Sed12g0245 230 Gene3D - 102 230 - -
Sed12g0245 230 CDD GST_C_Zeta 109 225 IPR034330 -
Sed12g0245 230 CDD GST_N_Zeta 21 93 IPR034333 -
Sed12g0245 230 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 105 230 IPR010987 -
Sed12g0245 230 PANTHER MALEYLACETOACETATE ISOMERASE 19 228 - GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER)
Sed12g0245 230 SUPERFAMILY Thioredoxin-like 17 103 IPR036249 -
Sed12g0245 230 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 19 100 IPR004045 -
Sed12g0245 230 NCBIfam maleylacetoacetate isomerase 23 228 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Sed12g0245 230 FunFam Maleylacetoacetate isomerase 104 230 - -
Sed12g0245 230 Pfam Glutathione S-transferase, N-terminal domain 23 99 IPR004045 -
Sed12g0245 230 SFLD Glutathione Transferase (cytosolic) 22 211 IPR040079 -
Sed12g0245 230 Gene3D Glutaredoxin 23 99 - -
Sed12g0245 230 SFLD Main (cytGST) 22 211 - -
Sed12g0245 230 Pfam Glutathione S-transferase, C-terminal domain 148 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0245 Sed-Chr12:1418675 Sed12g0247 Sed-Chr12:1418675 1.50E-125 dispersed
Sed12g0244 Sed-Chr12:1418675 Sed12g0245 Sed-Chr12:1418675 1.50E-125 tandem
Sed12g0245 Sed-Chr12:1418675 Sed12g0246 Sed-Chr12:1418675 1.50E-125 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0245 K01800 - csv:101213403 355.91