Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0245 | ATGGAAATCGAAGCTCAGCCTGATCAGAAGATCTCCGCCGATTCACCGTCGTCTTCGAAGCTCATTCTTCATTCTTTCTGGCAGAGTTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTTAATCTAGCGAGAGGAGAGCAATTAAGTCCAGATTTTGAGCGGTTAAATCCTCTCAAATATGTTCCTGTATTAGTAGATGGTCCTGTGGTAGTTTCGGACTCTTACGCGATTTTGCTGTATTTGGAAGAGAAATATCCACAGAAGGCGTTGCTGCCTGCTGATCTTCGTTTGAAATCTCTTAATCTGCAAGTAGCAAGTATTGTCAGCTCAAGCATACAGCCTCTTCTTATGCTGGGATTGCTGAAAACTATCGAGGAAAATTTTGGTCCAGTAGAGAAACTGTCGTGGGCTCAGACTAATATAGAAAAAGGTTTCAATGCTCTTGAGAAACTGCTGAAGGATTTTTCTGGCCGATATGCCTTGGGCGATGAAGTATTTATGGCTGATGTATTTTTAGCCCCCCAAGTTTCGATTGCGTTTGAGAGGTTCAACATTGACACGTCCAAGTTTCCTACTTTAGCGAGGATTTATGAATCTTACAAGTCGTTACCAGAATTCCAGGCCTCCTCACCAGAAACGCAGCCCGATGCCCTAAATTAG | 693 | 44.16 | MEIEAQPDQKISADSPSSSKLILHSFWQSSCSWRVRFALNLKGLSYEYRAVNLARGEQLSPDFERLNPLKYVPVLVDGPVVVSDSYAILLYLEEKYPQKALLPADLRLKSLNLQVASIVSSSIQPLLMLGLLKTIEENFGPVEKLSWAQTNIEKGFNALEKLLKDFSGRYALGDEVFMADVFLAPQVSIAFERFNIDTSKFPTLARIYESYKSLPEFQASSPETQPDALN | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1418675 | 1422858 | + | Sed0015749.2 | Sed12g0245 | 731201 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0245 | 230 | FunFam | Glutathione S-transferase Z1 | 19 | 103 | - | - | |
Sed12g0245 | 230 | SUPERFAMILY | GST C-terminal domain-like | 101 | 227 | IPR036282 | - | |
Sed12g0245 | 230 | Gene3D | - | 102 | 230 | - | - | |
Sed12g0245 | 230 | CDD | GST_C_Zeta | 109 | 225 | IPR034330 | - | |
Sed12g0245 | 230 | CDD | GST_N_Zeta | 21 | 93 | IPR034333 | - | |
Sed12g0245 | 230 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 105 | 230 | IPR010987 | - | |
Sed12g0245 | 230 | PANTHER | MALEYLACETOACETATE ISOMERASE | 19 | 228 | - | GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER) | |
Sed12g0245 | 230 | SUPERFAMILY | Thioredoxin-like | 17 | 103 | IPR036249 | - | |
Sed12g0245 | 230 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 19 | 100 | IPR004045 | - | |
Sed12g0245 | 230 | NCBIfam | maleylacetoacetate isomerase | 23 | 228 | IPR005955 | GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro) | |
Sed12g0245 | 230 | FunFam | Maleylacetoacetate isomerase | 104 | 230 | - | - | |
Sed12g0245 | 230 | Pfam | Glutathione S-transferase, N-terminal domain | 23 | 99 | IPR004045 | - | |
Sed12g0245 | 230 | SFLD | Glutathione Transferase (cytosolic) | 22 | 211 | IPR040079 | - | |
Sed12g0245 | 230 | Gene3D | Glutaredoxin | 23 | 99 | - | - | |
Sed12g0245 | 230 | SFLD | Main (cytGST) | 22 | 211 | - | - | |
Sed12g0245 | 230 | Pfam | Glutathione S-transferase, C-terminal domain | 148 | 190 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g0245 | Sed-Chr12:1418675 | Sed12g0247 | Sed-Chr12:1418675 | 1.50E-125 | dispersed | |
Sed12g0244 | Sed-Chr12:1418675 | Sed12g0245 | Sed-Chr12:1418675 | 1.50E-125 | tandem | |
Sed12g0245 | Sed-Chr12:1418675 | Sed12g0246 | Sed-Chr12:1418675 | 1.50E-125 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0245 | K01800 | - | csv:101213403 | 355.91 |