Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0248 ATGGAAATCGAAGCTCAGCCTGATCAGAAGATCTCCGCCGATTCACCGTCGTCTTCGAAGCTCATTCTTCATTCTTTCTGGCAGAGTTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGATTTTGAGCGGTTAAATCCTCTCAAATATGTTCCTGTATTAGTAGATGGTCCTGTGGTAGTTTCGGACTCTTACGCGATTTTGCTGTATTTGGAAGAGAAATATCCACAGAAGGCGTTGCTGCCTGCTGATCTTCGTTTGAAATCTCTTAATCTGCAAGTAGCAAGTATTGTCAGCTCAAGCATACAGCCTCTTCTTATGCTGGGATTGCTGAAAACTATCGAGGAAAATTTTGGTCCAGTAGAGAAACTGTCGTGGGCTCAGACTAATATAGAAAAAGGTTTCAATGCTCTTGAGAAACTGCTGAAGGATTTTTCTGGCCGATATGCCTTGGGCGATGAAGTATTTATGGCTGATGTATTTTTAGCCCCCCAAGTTTCGATTGCGTTTGAGAGGTTCAACATTGACACGTCCAAGTTTCCTACTTTAGCGAGGATTTATGAATCTTACAAGTCGTTACCAGAATTCCAGGCCTCCTCACCAGAAACGCAGCCCGATGCCCTAAATTAG 636 44.03 MEIEAQPDQKISADSPSSSKLILHSFWQSSCSWRVRFALNLKDFERLNPLKYVPVLVDGPVVVSDSYAILLYLEEKYPQKALLPADLRLKSLNLQVASIVSSSIQPLLMLGLLKTIEENFGPVEKLSWAQTNIEKGFNALEKLLKDFSGRYALGDEVFMADVFLAPQVSIAFERFNIDTSKFPTLARIYESYKSLPEFQASSPETQPDALN 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1418675 1422858 + Sed0015749.5 Sed12g0248 731204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0248 211 PANTHER MALEYLACETOACETATE ISOMERASE 19 43 - GO:0004364(PANTHER)|GO:0006559(PANTHER)|GO:0006749(PANTHER)|GO:0016034(PANTHER)
Sed12g0248 211 Gene3D - 88 211 - -
Sed12g0248 211 Gene3D Glutaredoxin 41 87 - -
Sed12g0248 211 SUPERFAMILY Thioredoxin-like 17 84 IPR036249 -
Sed12g0248 211 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 19 81 IPR004045 -
Sed12g0248 211 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 211 IPR010987 -
Sed12g0248 211 Pfam Glutathione S-transferase, C-terminal domain 129 171 - -
Sed12g0248 211 SUPERFAMILY GST C-terminal domain-like 82 208 IPR036282 -
Sed12g0248 211 Pfam Glutathione S-transferase, N-terminal domain 43 80 IPR004045 -
Sed12g0248 211 SFLD Glutathione Transferase (cytosolic) 42 193 IPR040079 -
Sed12g0248 211 CDD GST_C_Zeta 90 206 IPR034330 -
Sed12g0248 211 FunFam Maleylacetoacetate isomerase 85 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0247 Sed-Chr12:1418675 Sed12g0248 Sed-Chr12:1418675 8.20E-111 tandem
Sed12g0248 Sed-Chr12:1418675 Sed12g0249 Sed-Chr12:1418675 7.60E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0248 K01800 - csv:101213403 314.309