Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0271 ATGTCAGCCATTGAAAGCCCTTCATTTCTTTTTCTTTTTCTGGTTTTAATTTTTCCATTTTCCATTTTAGCTTATTCTGAAAACGAAGTCACAACTTGGTGCAGCCAAACGCCATATCCATCCCCATGCGAGCACTTTCTCAAAGCCAAATCCACCACTGAAAAATCCCCGATCGCCACGAAATCCAACTTCCTCGGAATCTTAGTCGAAACGGCGCTCGAACGCGCCGTTTCGGCTCACAAAACCGCGCTCTCCCTCGGCTCGAAGTGCCAAAACGGCCAAGAAAAATCTGCATGGACCGACTGCGTGGAGCTATACGAACAAATCATAAACCGGCTCAACCGAACCGCCTCCCGATCATGCTCCTCGACCGATGCCCAAACCTGGCTCAGCAGCGCTCTCACGGCTCTTGACACGTGTCGAACCGGGTTCGATGAGCTCGGGGTTTCGGCTTTTGGGTACCATTTAACGGCTAATAATGTTTCAAAGCTGATCAGTAATGGGTTGTCGGTGAATAAGCCGGCGGCGGAGGAGTGGGTTGCGACGCCGCGTACGGCGGAGGGGTTTCCGACGTGGGTGAAGCCCGGTGACCGGAGATTGCTGCAGGAGGGGGCTCCGACGGCGAACGTGGTGGTGGCGAAGGATGGGTCGGGGGATTATACGACGGTGGCGGCGGCGGTCGCCGCCGTGAAGGGCGGCGGGAGGTTTGTGATATATGTGAAATCGGGGGTTTATAGTGAGAATGTTGAGATTAAGGGTAAGAATGTTATGTTGGTTGGCGATGGGATCGGAAAAACTGTCATCACCGGAAGTAGAAGCGTCGGCGGCGGCTCCACCACTTTTAGATCCGCCACCGTTGCCGTCGATGGAGACCGATTCATCGCACGCGACATAACCTTCAGAAACACCGCCGGCGCATCAGACGGCCAGGCGGTGGCGCTCCGGTCCGGCTCCGATCTCTCCGTCTTCTTCCGCTGCGGTTTCGAAGGCTTTCAAGACACTCTCTACGTTTACTCCGAACGCCAATTCTACAAGCAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGCCGTGATCCAGGACTGCAACATCATCGCCCGAGATCCGCCGCACAACACAGTCACGGTCACCGCACAAGGCCGCTCGGATCCGAATCAGAACACCGGAATCTCGATCCACAGCTGTCAAGTCTCGTCGGCCGGCGGCGGCGGCGGCGTCAAGGCCTATTTAGGCCGGCCGTGGAGGCAGTACTCGAGAACGGTGGTTATGAAATCGTCGATCGGAGGATTTATTAGTCCGGCCGGGTGGTTGGAATGGAGCGGTAATTTTGCCCTAAATACTCTGTATTACGGCGAGTATATGAACACCGGCGCCGGAGCTTCGACGGCGAATCGTGTGACGTGGAAAGGTTATCACGTGATTACCAGTGCGGCGGAGGCTTCGAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCTTGGTTGCCGGAAACTGGCGTTCCGTTCACTTCTGGCCTCTGA 1536 55.6 MSAIESPSFLFLFLVLIFPFSILAYSENEVTTWCSQTPYPSPCEHFLKAKSTTEKSPIATKSNFLGILVETALERAVSAHKTALSLGSKCQNGQEKSAWTDCVELYEQIINRLNRTASRSCSSTDAQTWLSSALTALDTCRTGFDELGVSAFGYHLTANNVSKLISNGLSVNKPAAEEWVATPRTAEGFPTWVKPGDRRLLQEGAPTANVVVAKDGSGDYTTVAAAVAAVKGGGRFVIYVKSGVYSENVEIKGKNVMLVGDGIGKTVITGSRSVGGGSTTFRSATVAVDGDRFIARDITFRNTAGASDGQAVALRSGSDLSVFFRCGFEGFQDTLYVYSERQFYKQCDIYGTVDFIFGNAAAVIQDCNIIARDPPHNTVTVTAQGRSDPNQNTGISIHSCQVSSAGGGGGVKAYLGRPWRQYSRTVVMKSSIGGFISPAGWLEWSGNFALNTLYYGEYMNTGAGASTANRVTWKGYHVITSAAEASKFTVGNFIAGGSWLPETGVPFTSGL 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1549143 1554325 + Sed0006946.1 Sed12g0271 731227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0271 511 SUPERFAMILY Pectin lyase-like 205 510 IPR011050 -
Sed12g0271 511 Pfam Plant invertase/pectin methylesterase inhibitor 29 170 IPR006501 GO:0004857(InterPro)
Sed12g0271 511 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 173 IPR035513 -
Sed12g0271 511 SMART PMEI_2 25 171 IPR006501 GO:0004857(InterPro)
Sed12g0271 511 FunFam Pectinesterase 203 511 - -
Sed12g0271 511 Gene3D - 205 511 IPR012334 -
Sed12g0271 511 Pfam Pectinesterase 209 496 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed12g0271 511 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Sed12g0271 511 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 174 IPR035513 -
Sed12g0271 511 PANTHER PECTINESTERASE 9 502 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed12g0271 511 CDD PMEI-like_3 32 176 - -
Sed12g0271 511 NCBIfam pectinesterase inhibitor domain 9 173 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1117 Sed-Chr7:8224695 Sed12g0271 Sed-Chr12:1549143 3.60E-133 dispersed
Sed07g1118 Sed-Chr7:8229726 Sed12g0271 Sed-Chr12:1549143 1.10E-150 dispersed
Sed12g0271 Sed-Chr12:1549143 Sed14g1360 Sed-Chr14:22453067 2.90E-108 dispersed
Sed12g0271 Sed-Chr12:1549143 Sed02g1571 Sed-Chr2:51316048 1.70E-241 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0271 K01051 - csv:101217552 808.135