Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0279 ATGATCTCTTCTCAGATAATTCCTTCCAAAACCCCACTCTTCACAAACCCCACTTCCCCTTTTCCCATCTTCCACCCAAATCCACTCCCAACCGTCCGATCAAAATCCCCCATTCGCCCCCATTTCCCCACCCTCGCCGCCATTAATGGCGGTCCTTCAAAACCCACATCCCAATTTCTCAATCCCACCCGATTATCCAAATTTCCCGCCAACCCATTTGCGGATTTCCCCTCTAAACTTAACCCTAGTGTCCCCGCCGCCGCAGATGGCGGCGCTTCCGTCGACGATAACGCCGACGGTGGGAAAACCTTAAAGCTCGCCGTCGTGTTCGGGCTTTGGTATTTCCAGAACATCGTCTTCAATATCTACAACAAGAAGGTTCTTAATATCTTCTCTTTCCCATGGCTGCTCGCTTCGTTTCAGCTCTTCGCTGGATCGATTTGGATGATTGTTCTTTGGTCGTTGAAGCTTCAGCCATGTCCTAAGATTTCAAAGCCGTTCGTAATCGCTCTTCTCGGCCCGGCTTTGTTCCACACAATCGGCCATATTTCAGCTTGTGTTTCGTTCTCGAAAGTGGCTGTTTCTTTCACTCATGTGATTAAATCGGCTGAACCGGTGTTCTCGGTTTTGTTCTCATCGTTTCTTGGATATTCATATCCATTACAGGTCTGGCTTTCGATTCTCCCCATTGTGTTTGGCTGCTCTTTGGCTGCCGTTACCGAAGCTTCGTTTAACATCGAAGGGCTTTCGGGCGCTATGATTAGCAATGTAGGGTTTGTGTTGAGGAATATTTACTCCAAAAAGAGCTTGCAGAGCTTCAAGGAGGTTAATGGGTTGAATTTATATGGCTGTATTAGTATAATTTCGTTGTTGTATCTGTTTCCTGTGGCAATTTTCGTTGAAGGGTCGAAATGGGTTCAAGGATATCATCAAGCAATTGCCTCCATTGGTAATGCTTCAACATTATATATCTGGGTTTTGATTTCTGGCATCTTTTATCATCTTTATAATCAATCTTCTTATCAAGCTTTAGATGAGATCAGTCCTTTGACATTTTCTGTTGGGAATACTATGAAGAGAGTGGTTGTGATTGTTTCTTCTGTGCTGGTTTTTAGAAATCCTATTAAGCCTTTGAATGCTATTGGTTCTGCCATTGCTATTTTTGGGACTTTTCTGTATTCTCAGACCACAACTAAAAAGAGTGCCAAGAAGATTGAGGAAGGGGAAAAGAAGGATTGA 1239 44.15 MISSQIIPSKTPLFTNPTSPFPIFHPNPLPTVRSKSPIRPHFPTLAAINGGPSKPTSQFLNPTRLSKFPANPFADFPSKLNPSVPAAADGGASVDDNADGGKTLKLAVVFGLWYFQNIVFNIYNKKVLNIFSFPWLLASFQLFAGSIWMIVLWSLKLQPCPKISKPFVIALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFSVLFSSFLGYSYPLQVWLSILPIVFGCSLAAVTEASFNIEGLSGAMISNVGFVLRNIYSKKSLQSFKEVNGLNLYGCISIISLLYLFPVAIFVEGSKWVQGYHQAIASIGNASTLYIWVLISGIFYHLYNQSSYQALDEISPLTFSVGNTMKRVVVIVSSVLVFRNPIKPLNAIGSAIAIFGTFLYSQTTTKKSAKKIEEGEKKD 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1599613 1601396 - Sed0011480.1 Sed12g0279 731235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0279 412 SUPERFAMILY Multidrug resistance efflux transporter EmrE 288 395 - -
Sed12g0279 412 PANTHER SOLUTE CARRIER FAMILY 35 103 396 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Sed12g0279 412 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 104 403 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed12g0279 412 Pfam Triose-phosphate Transporter family 104 394 IPR004853 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1658 Sed-Chr1:12028864 Sed12g0279 Sed-Chr12:1599613 5.80E-62 dispersed
Sed04g3192 Sed-Chr4:42612918 Sed12g0279 Sed-Chr12:1599613 4.40E-88 dispersed
Sed10g0619 Sed-Chr10:4127415 Sed12g0279 Sed-Chr12:1599613 1.20E-85 dispersed
Sed11g1912 Sed-Chr11:33588037 Sed12g0279 Sed-Chr12:1599613 1.00E-60 dispersed
Sed12g0279 Sed-Chr12:1599613 Sed07g2664 Sed-Chr7:42095070 1.60E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0279 K15283 - csv:101219051 681.019