Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0281 ATGGAAAAAGAACTGAAGCTATTCAGAACGTGGTCAAGTCCGTTCCCTCTGAGAATAGTATGGGCGTTGAAGTATAAAGGATTAGAATACGACACCGTTTACGAAGATCTGGCCAACAAGAGTTCGTTGCTTTTGAAGTACAATCCAATCCACAAGAAGGTTCCGGTGCTCGTCCATGCCGGAAAACCCATTTCCGAATCGCTCGTAATTCTCGAATACATCGATGAAGTATGGAACCACAATCCGTTGCTGCCTCGAGATCCTTACCACAGAGCCCTAGCTCGCTTTTGGGCCAAATTTGGCGATGACAAGGTTTTGGAATCAATAAAGAAAGTGTTTATGAACAAAGGGAAAGTCAAAGAGGAAGGAATAGAAGAATCCTTTGAGAATTTGAAGCATTTGGAAGAGGAGTTAAAGGGAAAGAAGTTTTTTGGAGGGGAGGCCATTGGGTTTGTGGATATTGCACTTGGATGGCTTGCAAACTTGGTAAGTGTAATGGAGGAAGTTCTTGGACTTGAGCTCATAACTGAAGAAAAGTTTCCCCTCTTGTCCAAATGGACTAAGGAATTTGCTGCTGCCCCAATCATCAATGAAAACTGGCCTTCTAGAGACCAGCTTGTCATCAAGTACCAAGCAATGCATCAAAATTTAATGAGTCAACTAGCATAG 669 42.75 MEKELKLFRTWSSPFPLRIVWALKYKGLEYDTVYEDLANKSSLLLKYNPIHKKVPVLVHAGKPISESLVILEYIDEVWNHNPLLPRDPYHRALARFWAKFGDDKVLESIKKVFMNKGKVKEEGIEESFENLKHLEEELKGKKFFGGEAIGFVDIALGWLANLVSVMEEVLGLELITEEKFPLLSKWTKEFAAAPIINENWPSRDQLVIKYQAMHQNLMSQLA 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1606834 1608516 - Sed0020858.1 Sed12g0281 731237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0281 222 Gene3D Glutaredoxin 1 83 - -
Sed12g0281 222 SFLD Main.3: Omega- and Tau-like 2 219 IPR045073 -
Sed12g0281 222 FunFam Tau class glutathione S-transferase 1 86 - -
Sed12g0281 222 SUPERFAMILY GST C-terminal domain-like 76 216 IPR036282 -
Sed12g0281 222 Gene3D - 84 220 - -
Sed12g0281 222 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Sed12g0281 222 FunFam Tau class glutathione S-transferase 84 220 - -
Sed12g0281 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 210 IPR010987 -
Sed12g0281 222 Pfam Glutathione S-transferase, C-terminal domain 114 194 IPR004046 -
Sed12g0281 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Sed12g0281 222 CDD GST_C_Tau 88 207 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Sed12g0281 222 SFLD Main (cytGST) 2 219 - -
Sed12g0281 222 SUPERFAMILY Thioredoxin-like 4 104 IPR036249 -
Sed12g0281 222 CDD GST_N_Tau 5 78 - -
Sed12g0281 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 210 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0385 Sed-Chr8:2332067 Sed12g0281 Sed-Chr12:1606834 1.10E-57 dispersed
Sed08g2064 Sed-Chr8:34870197 Sed12g0281 Sed-Chr12:1606834 1.70E-42 dispersed
Sed08g2065 Sed-Chr8:34873610 Sed12g0281 Sed-Chr12:1606834 2.50E-40 dispersed
Sed12g0281 Sed-Chr12:1606834 Sed14g0672 Sed-Chr14:6755120 4.60E-50 dispersed
Sed12g0281 Sed-Chr12:1606834 Sed02g1454 Sed-Chr2:50600853 3.40E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0281 K00799 - csv:101219529 386.726