Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0290 ATGGCTGGCATAGATTTGAGCTCTGCTTCTCACTTTGTTCATCAACTTCAGCAGCACCGTTCCGCCAATCTCCAGCTGCAACGGCCGACAGAAGACGACGACGGCTCCGACCAGTTCCACGGCGGCGATGACGACCAAAACAACTCTCTTCAACCCAACTCGAGCGGCGAAATCGTGGGCCGCCGCCCGAGGGGCCGGCCTCCCGGTTCGAAAAACAAACCGAAGCCTCCGGTTATTATTACCCGAGAAAGCGCCAACACCCTCCGAGCCCACATCTTGGAAGTCAACGCCGGTTGCGATGTGTTTGACTCGATAGCCACGTATGCTCGTAAACGCCAACGTGGCATCTGCATCCTGACCGGCACCGGTACAGTCACCAATGTTACCCTGCGGCAACCTGCATCGGCCGGTGCCGTTATGACACTTCCTGGCAGATTTGAGATATTGTCTTTGTCGGGATCGTTTTTACCGCCGCCAGCTCCGCCGGGAGCCACGAGTTTGACTATCTTCCTTGCTGGAGGGCAAGGACAGATAGTCGGAGGGAATGTTGTAGGTTCTTTGATTGCATCCGGACCGGTGATTATCATGGCTTCGTCGTTTACAAATGTTGCCTACGAGAGGCTGCCGTTGGACGAGGAGGAACCGTCCAACAACGTAGGTGGTGGTGGTGGTGGTGACAGTGGTGGAAACCTTAACAACCCGTTCCCGGACTCATCGGGCGGGTTGCCCTTCTTTAATCTCCCGTTGAACATGCCCGGGAATCAAAACCAGCTGCCGGTGGATGGATGGGCCGGTGGGAACTCCGGTGGGAGAGGTTCTTATTGA 825 56.12 MAGIDLSSASHFVHQLQQHRSANLQLQRPTEDDDGSDQFHGGDDDQNNSLQPNSSGEIVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVNAGCDVFDSIATYARKRQRGICILTGTGTVTNVTLRQPASAGAVMTLPGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQIVGGNVVGSLIASGPVIIMASSFTNVAYERLPLDEEEPSNNVGGGGGGDSGGNLNNPFPDSSGGLPFFNLPLNMPGNQNQLPVDGWAGGNSGGRGSY 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1686312 1687493 + Sed0020691.1 Sed12g0290 731246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0290 274 ProSiteProfiles PPC domain profile profile. 85 222 IPR005175 -
Sed12g0290 274 Gene3D - 88 217 - -
Sed12g0290 274 MobiDBLite consensus disorder prediction 212 274 - -
Sed12g0290 274 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 224 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed12g0290 274 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 201 IPR005175 -
Sed12g0290 274 MobiDBLite consensus disorder prediction 42 56 - -
Sed12g0290 274 CDD DUF296 89 200 IPR005175 -
Sed12g0290 274 MobiDBLite consensus disorder prediction 16 78 - -
Sed12g0290 274 FunFam AT-hook motif nuclear-localized protein 88 215 - -
Sed12g0290 274 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0289 Sed-Chr5:1834335 Sed12g0290 Sed-Chr12:1686312 1.10E-79 dispersed
Sed12g0290 Sed-Chr12:1686312 Sed12g1013 Sed-Chr12:6513577 6.90E-56 dispersed
Sed01g4099 Sed-Chr1:69893436 Sed12g0290 Sed-Chr12:1686312 6.30E-77 wgd
Sed12g0290 Sed-Chr12:1686312 Sed04g2132 Sed-Chr4:35516710 2.70E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0290 - - - 0.0