Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0307 ATGAAATCCCGACGACGCAGTGAAGGCTCCACAATGGCTCCAAGGAAGAAACCGAATTCCTCTTCGAAGAAGCTCAATCCAAATCCGCCATCGGAGCCTTCCAAGTTCGGCATCCAACACTTCTTCGATCGCCACTCTCAAAACGTTGCACAATCTCAGAAACTCACTCCGCCAAATTCCGATTCGAAAACTGATGCTGGAGATGATCGGAATGTTGGACGGCCGGATTCCATGGCGGCGGCGGCGGAGCCGGTGCGGGTGGTTCCGGTGAATGATGCAGTTTTGGCTTCTCAAAACCCTAAGTTGCCGCAGGGGATTGATGCTGGCTGTTCGTCTCAGAATGCGACGCCTGAGAATTTGATTGCGGCCGTTGGAGATTCTGGTGCTGAGTTTTCTAACAAGTTGTCTCCAGAGTTTTCAAAGTCCGTGTCTCTGAAGCGCTTCAAGTTCTCTCCCGGGATGTTGATTAAGCAAAGTCAAGAAGATGGCGCTATTAATGACGAAATCACATGGAAGATATCTCCAGTAAACGATAGACTTCAGGCTGTTTCAAAGCAGCTGCCGGAAACTATAAGGGTTCTAGCGAACTCCTCAAGGCTTAGTTCTTTGAGAATCCGACAGTGTTCGCGAAATAAGACTTCTTCTGTCGAGCCTGGGAATTTTGAGCAGTTGAGTTCACTAAACCCAAAACCTACTGAAAGATCAGTGGTTTCGTTGAATAAGGCTGGACGGAAAAGGTTAAATCCTAAACATGATATGGAACCTTATGGGGCTGCTGTTGATAGTTTGGGTGGCTCTAGAGGATCCAACAGTCAGAGTCCATTCCGGACGCCCCCGTCTCTCTCATACTGCGATAAGATTGTCAATGATGTTGCTTGTAATGAAGCAGCACCCGATCACCCTATCTTAAGACCACACAAGAAGGCATTGCTTGAGCTTTTAGATCAAGTAGAAGATGTCATGACAGTTGATACTGCATCTCCCAGTCCCACTGACTTGGAGGAGGATTCATCTGAATTACAAGGTAGAAATGGGAAGAAATTGACTACTAGGGCTGATTCAGCTGCTATGCAAGTCCCTATAAAGATTCAAGACACTGTGATGAAGGCATCGCCTTGTGATTTTCTTGTCTTGGAGGTAACAGAGAACTGTGAACTGGCTGATACATCTGGTGTTAAACGCTCATATAAGGTTCTACGCTTGCTAAATGAGCAAAATGGAGAAGAGCGGGCTGTCTATCTTTGTGAAGACTGGTTTGACAGTATTATTTCACCTGGAGATACTGTGAATGTTATTGGCGATTTTGATGAACAAGGAAGATGTCATGTTGATCACGACAATAATTTTGTTATCCTACACCCCGATATACTTGTCTCTGGAACTCGGGTTGCTGGTCATTTGACCTGTCCGAGAAGGAGTGTTCTTGATGAGAGGCTGAAAAGTAACGAACAGTCCATTTCGGCATTAATTGGTACTTTGCTGCACCAGGTTTTTCAGGCTGGTCTTTTAGAAGAGGCACCGACTGTTGCCTTTTTGGAAGAAGTTTCAAGAATGGTTATTCAGAAAAGTATGGAAAATGTATATGCATGCGGAGCAAATGAAAAGGATATATGTCAAACCATGTATGAAGCGGTTCCAAAAATTTTGCATTGGATCGCCCTATTCAAATGCCCAATGGGCTCTAAAGCTCCGACTATTGAGTTTAGATCTGATGATGGTCCCAGGAAAGTTAGTATATCGGAGGTTATTGATATTGAGGAGATGGCATGGGCTCCTAAATATGGGTTGAAAGGAATTATTGATGCTTCTGTCAGGGTAAACGTAATGTCGCATTATAATAACTGTGCCGAGAGTGTCGTGCCTTTAGAGTTTAAAACTGGGAAGGTGCCAGCTGGCCAGTCTTCCATGGAACATTGTGCCCAGGTGATCTTGTACACACTACTTATGTCTGAGAGGTACCAGAAACATGTTGCTTATGGTCTCCTCTACTATCTTCGATCGGATCAGACTCAGGGAATCCGCGTTCAAAGATCTGACTTGGTGGGGTTAATCATGCGTCGAAATGAGCTTGCAAATAACATTCTCAAGGCATCAACTGCACAATTACTTCCCCCCATGTTACAGATTCCAAGTGTGTGCAAAGGATGTCGCCATCTTGATGTTTGTACCATTTATCATAAGATGCAAAATGGAAACAGAGAGAGTAGTGGGCTTGGAGTTTTATTTGACTCCCACACAGATCATTTGAAAGCTTCTCATGGCATTTTCTTTCAGCATTGGGAAAAATTGATTGATTTAGAGGCCAAGGAAACAGAGCTTGTAAAGAGGGGAGTTTGGCACTCACGTAGTGCGGAGAAAAATCAAATGTCTACCTGTCTTTCCTCTATTGTTCTTAGTGTGTTGGATGACCAACCACATTGTACTGTTGAAAAGGACAACCGAATCAGCTATCGTTTTGTGCGTCAAGATTTGTCTTCACTGTGTTCGAAAGATTCAAATGACCATAGTTCAAATTCAATAAATGAATTGGAAAGTTCACTTAGAGTTGGAGACTATGTGATCCTTAGTACAGATTCTGGGCATTTGCATTTGACTCTAGCAAGTGGGATTATAACAGATCTAACAAGTCTTCATATAACTGTTTCTTTTTCCAAGCGCCTACGTTTGCCTGGAAGCACTTCTTCTACCGAGGCACATGATCTTATGAAGCAGGTTTGGCGGATTGACAAGGATGAATTTATGACTTCCTTTGCAGTCATGAGGTTTAATCTTGTCCAACTGTTTCTGCAAGGTGAACAAAATGCTCATCTTAGAAAGTTGATCGTAGAGCTTGCGGCTCCGAGATTTGATAGTGGATGCATATTCAGCCAAGATCCAGCAATATCTTACATCTGGTCTGAGAAGAATTTAAATAATGACCAACGTCGAGCCATAATTAAGATACTTACAGCAAAGGATTATGCTCTGATTCTAGGAATGCCTGGAACAGGCAAGACATCCACAATGGTTCATGCTGTGAAGGCATTGTTAATGAGAGGTGCTTCTATTTTGCTCACGTCATACACAAACGCAGCTGTTGATAACTTACTTGTCAAACTGAAATCACAGAATATTGATTTTATACGGATTGGAAGAGTTAATGCAGTGCATGAAGACGTTCGCAGCCATTGCTTCTCAGAGTTGAACATACAAGGCGTGGAAGACATGAGAATGAGACTGGACCAAGTGAAAGTTGTTGCAGTCACTTGTTTGGGGATAAGTAGTCCCTTGCTTGTCAATAAAAAATTTGATATATGCATAATGGATGAAGCTGGACAGACCACCCTTCCAGTTTCCCTTGGGCCTTTGATGTTTGCTTCAACATTTGTTCTTGTTGGCGATCACTATCAACTACCTCCTCTTGTTCAAAGCACAGAGGCTCGAGAAAATGGGCTGGGGGTAAGCTTGTTTTGCAGACTTTCAGAAGCACATCCTCAAGCAATTTCTGCACTACAGAGCCAGTATCGCATGTGCCGAGACATTATGGAGTTATCAAATGCCTTGGTATATGGAGACAGATTGCGTTGTGGTTCAGAAGAAACAGCGAACGCAAGGCTTGAGTTTTCAAGTTCAAAGTTGTCTTCATCTTGGCTTAAGGAGGTTTTAAACCCATGCAAACCAGTTATCTTTGTTTGTACAGATTTATTACCTGCTTACGAGACGAGAGATCGCAAGATTGTGAACAACCCAATTGAAGCTAACATATTAGCAGAGGCGACGAAGGGACTGCTTGATGGTGGGATTAAAGGGAATGACGTCGGAATTATTACTCCTTATAACGCCCAGGCTAGCATCATTCGTCTAGCTATCAACGTAGACTCTGTGGAGATACATACCATTGACAAATACCAGGGAAGAGATAAGGACTGCATATTGGTGTCCTTTGTCAGGTCGAGTGAAAATCCGAAGAGCTGTACTACCTCACTTCTTGGAGACTGGCATAGAATTAATGTGGCCATTACACGTGCCAAGAAAAAACTAATCATGGTTGGATCACGCAAAACACTATCAAAAGTTCCACTACTGAAGCTTCTCATCAAGAAGGTCGAGGAACAATCAGGCATCTTGAATGTAACAAGGAATGATATACTTCAAAGTAGCAAGCTTCATGGTTGCACATAG 4161 43.14 MKSRRRSEGSTMAPRKKPNSSSKKLNPNPPSEPSKFGIQHFFDRHSQNVAQSQKLTPPNSDSKTDAGDDRNVGRPDSMAAAAEPVRVVPVNDAVLASQNPKLPQGIDAGCSSQNATPENLIAAVGDSGAEFSNKLSPEFSKSVSLKRFKFSPGMLIKQSQEDGAINDEITWKISPVNDRLQAVSKQLPETIRVLANSSRLSSLRIRQCSRNKTSSVEPGNFEQLSSLNPKPTERSVVSLNKAGRKRLNPKHDMEPYGAAVDSLGGSRGSNSQSPFRTPPSLSYCDKIVNDVACNEAAPDHPILRPHKKALLELLDQVEDVMTVDTASPSPTDLEEDSSELQGRNGKKLTTRADSAAMQVPIKIQDTVMKASPCDFLVLEVTENCELADTSGVKRSYKVLRLLNEQNGEERAVYLCEDWFDSIISPGDTVNVIGDFDEQGRCHVDHDNNFVILHPDILVSGTRVAGHLTCPRRSVLDERLKSNEQSISALIGTLLHQVFQAGLLEEAPTVAFLEEVSRMVIQKSMENVYACGANEKDICQTMYEAVPKILHWIALFKCPMGSKAPTIEFRSDDGPRKVSISEVIDIEEMAWAPKYGLKGIIDASVRVNVMSHYNNCAESVVPLEFKTGKVPAGQSSMEHCAQVILYTLLMSERYQKHVAYGLLYYLRSDQTQGIRVQRSDLVGLIMRRNELANNILKASTAQLLPPMLQIPSVCKGCRHLDVCTIYHKMQNGNRESSGLGVLFDSHTDHLKASHGIFFQHWEKLIDLEAKETELVKRGVWHSRSAEKNQMSTCLSSIVLSVLDDQPHCTVEKDNRISYRFVRQDLSSLCSKDSNDHSSNSINELESSLRVGDYVILSTDSGHLHLTLASGIITDLTSLHITVSFSKRLRLPGSTSSTEAHDLMKQVWRIDKDEFMTSFAVMRFNLVQLFLQGEQNAHLRKLIVELAAPRFDSGCIFSQDPAISYIWSEKNLNNDQRRAIIKILTAKDYALILGMPGTGKTSTMVHAVKALLMRGASILLTSYTNAAVDNLLVKLKSQNIDFIRIGRVNAVHEDVRSHCFSELNIQGVEDMRMRLDQVKVVAVTCLGISSPLLVNKKFDICIMDEAGQTTLPVSLGPLMFASTFVLVGDHYQLPPLVQSTEARENGLGVSLFCRLSEAHPQAISALQSQYRMCRDIMELSNALVYGDRLRCGSEETANARLEFSSSKLSSSWLKEVLNPCKPVIFVCTDLLPAYETRDRKIVNNPIEANILAEATKGLLDGGIKGNDVGIITPYNAQASIIRLAINVDSVEIHTIDKYQGRDKDCILVSFVRSSENPKSCTTSLLGDWHRINVAITRAKKKLIMVGSRKTLSKVPLLKLLIKKVEEQSGILNVTRNDILQSSKLHGCT 1386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1833876 1859620 - Sed0025177.1 Sed12g0307 731263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0307 1386 MobiDBLite consensus disorder prediction 1 85 - -
Sed12g0307 1386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 969 1355 IPR027417 -
Sed12g0307 1386 PANTHER DNA2/NAM7 HELICASE FAMILY 241 1364 IPR045055 GO:0005737(PANTHER)|GO:0017108(PANTHER)|GO:0071932(PANTHER)
Sed12g0307 1386 CDD DEXXQc_DNA2 969 1169 IPR026851 GO:0017116(InterPro)
Sed12g0307 1386 Gene3D - 893 1066 IPR027417 -
Sed12g0307 1386 Gene3D - 1067 1167 IPR027417 -
Sed12g0307 1386 MobiDBLite consensus disorder prediction 324 347 - -
Sed12g0307 1386 Pfam AAA domain 1146 1346 IPR041679 -
Sed12g0307 1386 MobiDBLite consensus disorder prediction 264 278 - -
Sed12g0307 1386 Gene3D - 459 723 IPR011604 -
Sed12g0307 1386 MobiDBLite consensus disorder prediction 13 33 - -
Sed12g0307 1386 MobiDBLite consensus disorder prediction 209 235 - -
Sed12g0307 1386 Pfam DNA replication factor Dna2 404 606 IPR014808 -
Sed12g0307 1386 MobiDBLite consensus disorder prediction 44 62 - -
Sed12g0307 1386 FunFam DNA replication helicase Dna2 904 1167 - -
Sed12g0307 1386 FunFam DNA replication helicase Dna2 569 723 - -
Sed12g0307 1386 CDD DNA2_N-like 459 694 - -
Sed12g0307 1386 Gene3D - 1168 1382 IPR027417 -
Sed12g0307 1386 Pfam AAA domain 969 1060 IPR041677 GO:0004386(InterPro)
Sed12g0307 1386 Pfam AAA domain 1070 1137 IPR041677 GO:0004386(InterPro)
Sed12g0307 1386 MobiDBLite consensus disorder prediction 209 278 - -
Sed12g0307 1386 CDD SF1_C_Upf1 1170 1363 IPR047187 -
Sed12g0307 1386 FunFam DNA replication helicase 1168 1381 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1777 Sed-Chr10:34848032 Sed12g0307 Sed-Chr12:1833876 1.40E-12 dispersed
Sed12g0307 Sed-Chr12:1833876 Sed12g1428 Sed-Chr12:11788374 6.00E-15 dispersed
Sed12g0307 Sed-Chr12:1833876 Sed05g0550 Sed-Chr5:4018348 6.00E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0307 K10742 - csv:101220726 2274.97