Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0308 ATGGAGCAGAAATATCCGCATGGAAGAGGAGCTGATGCAGTTTTACATCTTCAGCCAAACTCCTCAATTTCTATTGCATATCACCCACTCTTTGGTCCACATGATGATTTAGTTCTTCTTGAGGTCGATGAAAAGCTTCTCGAGGAAGTTCTCCACCAACGAGTAAGCATCAGAGGACAGTCGGAAGAAGAAGCCGTCTTTTGCACGAAGTCGAAAACTTATGGAATCAAATATGTAGGAACTTCCAATTCTGTACTCCTCATACCCCCATTAAGTCGATCGGAATACTACGAAAACGAAATAGATAGCCTTGAGAATGATGGCTCTAAAGAAGTTGCACCTGTGATTAAAGTTGCTCCAGGGTTCATGGAACTTGTTGAGATTTCTCCCAGGATTGATAAGCTTAAATTGCTTCTCTCAGAGAAACCTTACAGCTTATCCGAAGAGTGGGAAAGCGAAGAGATGGACAAACATGAAAATGGAATTTATAACTGGGATGATCTTAGGGACAAGGTTCAGGCTAGCGACGATGAATTGAAAGCTGGATTACAAGTACTTTCCGCCGTTGAGATTGATGGGCACTGGAGACTTGTGGACGAAAAATACATGGACTCCATACTACAGATGCTTTTGAATAACCGAATTTTAAACGATTGGTCTCTGGATGCACTTGATGAATGCGTAATCGTGAAAGTGATGGAATTAGATGGCTTTCCTGAAAAACTGGTGCATCATTGTCTCCAAGTTTATGGTGATAAATTGGATGGAAATGAGGGGACTATCTGTTTATGGAGATTGGACGAGAAACGGGTTTGTGTTCATTTTGCAAGAGAAGTTTTGAAGAAAGGAAAGATGAAGCTGGAGCATTTCATGGATGAATGGATACGAAAAATCCCATTGGGAATGTGTGCCAACTTCGACATGTTAGACGGTGAAGTTCTGACTGAGAGACTCGGCGTTGAGACGTGGGTTCGTGGTTTTAGAGCTTCTTCATTTCCATCGAATCCTGCTGAACGATTCAACATTTTGTTTAGAGAACGACCAAAATGGGAGTGGAAGGATCTGCATCCCTTTATCAGAGATCTTACCGTTCCGGGTCTTTCATCGGAAGGTTTGCTTCTCAAATACACCCGAAGAACTCAATCGAACCCGAAAGACGAGCCGGTATTCAGTGCGAGATAA 1182 42.47 MEQKYPHGRGADAVLHLQPNSSISIAYHPLFGPHDDLVLLEVDEKLLEEVLHQRVSIRGQSEEEAVFCTKSKTYGIKYVGTSNSVLLIPPLSRSEYYENEIDSLENDGSKEVAPVIKVAPGFMELVEISPRIDKLKLLLSEKPYSLSEEWESEEMDKHENGIYNWDDLRDKVQASDDELKAGLQVLSAVEIDGHWRLVDEKYMDSILQMLLNNRILNDWSLDALDECVIVKVMELDGFPEKLVHHCLQVYGDKLDGNEGTICLWRLDEKRVCVHFAREVLKKGKMKLEHFMDEWIRKIPLGMCANFDMLDGEVLTERLGVETWVRGFRASSFPSNPAERFNILFRERPKWEWKDLHPFIRDLTVPGLSSEGLLLKYTRRTQSNPKDEPVFSAR 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1860787 1863878 - Sed0012756.1 Sed12g0308 731264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0308 393 Pfam Sister chromatid cohesion protein Dcc1 38 359 IPR019128 GO:0007064(InterPro)|GO:0031390(InterPro)
Sed12g0308 393 PANTHER SISTER CHROMATID COHESION PROTEIN DCC1-RELATED 10 393 IPR019128 GO:0000775(PANTHER)|GO:0000785(PANTHER)|GO:0007064(InterPro)|GO:0031390(InterPro)|GO:0031390(PANTHER)|GO:0034088(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0308 Sed-Chr12:1860787 Sed12g0309 Sed-Chr12:1860787 2.90E-233 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0308 K11271 - csv:101203202 658.677