Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0322 ATGGGCCCGAAACGCCTCCAAAGCCCACTACAAGTTAGATCCAAAATCCTCGTTTCAGTTTCCTCCATTTTCTCAGCTTCCGAACTGCACAAAGCGAAACCCTTTGAGTTCTTCTTCTCCTTCGTTTCTCTCCGACCTTGCGATCGCCGAGCGACTCTCCTTCCGGTCTCCGCCATGTTCCGACGAGCCTCCAGCCTTTTGGCCCGCCCTCTCCTCTCTGCAAGGGCCAGATCATTCTCCGCCGATCTGCCGGCGGCGGCGTCAACCGACGACGCCTTTGTCGCCGCCTGGAAGAAGGTGATTCCTAACATAGATCCTCCTAAAACTCCTCTCTCTTTCATGGCTCCTCGTCCTGCTACGCCTTCTTCCATCCCTGCTAAACTCACCGTCAACTTCGTTCTTCCATATGCTTCCGAGCTCTCCGGCAAAGAGGTTGACATGGTAATTATTCCAGCTACAACTGGGCAAATGGGTGTTCTTCCTGGCCATGTGGCTACCATCGCAGAGTTGAAACCCGGAGTTATGTCAGTGCACGTAGAAAGTGAAACCAAAAAGTACTTTGTGAGCAGTGGTTTTGCATTCATCCACGGCAACTCATACGCTGACATTATCGCCGTCGAAGCTGTGCCTTTAGAGCAAATCGACGCCAGCCAAGTACAAAAGGGTCTCGCAGAATTCACCCAGAAGTTGAACTCTGCCTCAACAGACTTGGAGAAAGCCGAAGCCCAAATTGGAGTCGAAGTGCACAGCGCCATGAATGCTGCCCTTACAGGATAG 777 52.25 MGPKRLQSPLQVRSKILVSVSSIFSASELHKAKPFEFFFSFVSLRPCDRRATLLPVSAMFRRASSLLARPLLSARARSFSADLPAAASTDDAFVAAWKKVIPNIDPPKTPLSFMAPRPATPSSIPAKLTVNFVLPYASELSGKEVDMVIIPATTGQMGVLPGHVATIAELKPGVMSVHVESETKKYFVSSGFAFIHGNSYADIIAVEAVPLEQIDASQVQKGLAEFTQKLNSASTDLEKAEAQIGVEVHSAMNAALTG 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2002980 2009195 + Sed0000028.1 Sed12g0322 731278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0322 258 NCBIfam ATP synthase F1 subunit epsilon 133 244 IPR001469 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed12g0322 258 Coils Coil 223 243 - -
Sed12g0322 258 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 84 258 IPR001469 GO:0000275(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0045261(InterPro)|GO:0046933(InterPro)|GO:0046933(PANTHER)
Sed12g0322 258 CDD F1-ATPase_delta 128 251 IPR001469 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed12g0322 258 Hamap ATP synthase epsilon chain [atpC]. 126 246 IPR001469 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Sed12g0322 258 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 128 209 IPR036771 -
Sed12g0322 258 Gene3D - 216 257 - -
Sed12g0322 258 Gene3D - 122 215 IPR036771 -
Sed12g0322 258 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 128 199 IPR020546 GO:0015986(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0322 Sed-Chr12:2002980 Sed02g1541 Sed-Chr2:51103241 9.00E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0322 K02134 - csv:101206104 327.791