Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0327 ATGTCTTTTAATCAATCTAGGCGTCATAAGGATGAGGATTCTCAGTTTAAGAAATCCGCGCGATCGTCAAGCTTCAATCAGCAGCGAAGCTCTAACCATAGTTTTAAGCAGTCCAATGGTGCACAACACGAACGGGAATCTAGGGCTGGTGGATCGTCGGTAGGTTCTACCGTCTCTACTGCTCCTCGCGGAGGAGAAAACGGTTCTCATGTGCAGTCGCAGCAGAATGGTTCAGCATCCAATTCAACAAAATTGACAGGATTCCAAAGCGGGGATGTTAAAAAGAATGAAACTTCTCAAACGACCTCGAGGACTTCTAATGAAATTTCAGAATCCAAGAGTGGGATTGTTCAGAATAATGCAACTTCTAAATCCACCTTAAAAACTTCTGTCGCCAATGCATCCTCAACAGTTTTTAAAGACTTGCGAGGACAGCATAACACATTTCCACTTCAGTTTGGATCCCTAAGTCCTGGTTTCCAGGCACAATACCATTCGGTTAAATCCGTACCTTCTGAATCAGTCTTGCCAGTACCCAGGCAACCAATAGCAAAAAGTGAATCCAACGTCTGTGGTAAACTTAATATTGGAAAGTCAAATCCAGAGCCCGAGACTAAAAGGGAGATGCAAGTATCTGCCGGAGCGCCCTTAAACCAGAATCAGAAGCCTACAGTCATTAGTCACCCAGCTTCTAGTGAGAGTATGAGTCTGGTGCATCATATTGCTAATGCACCTAATGTGAACGAAGTACAAGTTCATGATTTGATCTCCACTTCCTCAGCAGCAAAGGATGTAGCAATTCAGCCTCCTCTCGGATCTTTGATGCAGGTCATTGACTCATGTCCAAAAGAAAGCCTGTCTAGTTCAAATTCAATTAAAGCCAATGACAAGATATCAGGCAATGAAGAACTAATCCAGCTGCCGAGTCAGGTGGGTTTTCATACAAGTCAAGATCTTGTTTCTCAAAACCGTAATAGTTATTCAGACAGTGTAGTTTCTGAAACCATAAAAACTTCAGAATCAAATGCTGTCGAGAGAGGAGGCTCGTCTAATGAAGGTTCCCGTGCAGAGTTTAGTGTTGAACCTGTAAGCTCTCATGCAGAAGTTGACAGTACAAAGGACAATAACGATCTTTCTAACTCCATAACTCATGGATATAATACTTCACTTACTATTGCATCTTCTTATCAAAGTGATAGTAACAAAAATACTGAAATGGGCCAGGCTAATCTGCAGTCTGATCCGAACTTTATACCCTCTGTTGAGGATAACCCTGTTGTGAGCGTAAATAAGAGGAGGAATACGTCTAAAAGAGGGAAGAAGAAGAGAAAGGAAATTCTTCGTAAGGCAGATGCTGCTGGGACCACTTCTGACCTTTATATGGCATATAAAGAATCTGAAGATAAGAAAGAGACCATCATGTCTGCGGAAATCTCCAATGAAAATTTAAATATGAATCTCGAATCTGCTGGCTCCATTAAGGAAGAGGTTGTCTTGACCAAGACGGATGTTCAGAGTAAACTCGAGCCAGATGATTGGGAAGATGCAGTTGATATTCCTGTTGTTAAGTTGAAACACGAGGATGCAGGTGAAGATATGGCCAAAAAATACTCTAAAGATTTCCTCCTGAAATTTGCAGAGAAGTTCATGGACCTCCCCGAAGGGTTTGAAATTACTCCCCACATGAAGGCTTTAATAAGTACTAACCATGGCTCTTGTTCTGTTAATAGTGCTAATCTTGGAAAAATTGATAAGAAAAATGGAGGGTCTTGTCTCGACCATCGTGCTTCTACTGTTGATGACAGGCTATTTGCTTTAGAGCGGGATTTACACCTTGATAGGGCTCGACCTACCCAAGGTGATATCAATGGTGCATTAAAGAACTCAAGGGCATACATTGGTTCTCAGGGAAAGATTCAGAGAAACGGTTCAAGCAGTGATAGGTGGCAAAAGGATACTAAATTTCAGATGAACGGTTTAATTTCTCCAACTCCATTACAAATGAAGCACAGAACCGAGAACAAGTATGAAGTGGGTAAAGTGGCCGACGAGGAAGAAACCAAACAAAGGAAGCTGAAGGCTATACTAAACAAGCTAACCCCACAAAATTTTGAAAAACTTTTTGAACAAGTGAGAGCAGTTAATATTGATAATTCCAAGACACTAAGTGGTGTCATCTCTCAGATCTTTGACAAAGCTTTGATGGAGCCTACTTTTTGTGAAATGTATGCCAATTTTTGTCTCCATCTGGCTGGTGAGCTACCTGATTTCAGCAATGATAATCAGAAGATTACTTTTAAGAGGTTGCTTTTAAACAAGTGCCAGGAGGAATTTGAGAGAGATCAGGAGGAAAGTGATGAAATTAACAAGGTCAGTGAGATGCAGTCTTCAGAGGAACAAGAAGCGAAGAGACTAAAGGCGCGCAGAAGAATGCTAGGCAACATCAGATTAATTGGAGAACTTTACAAAAAGAAGATGATAACAGAAAAAATCATGCATGAATGCATCAAGAAGTTGTTGAGTCAATATCAAAATCCTGATGAGGAAGATATTGAAGCACTGTGCAAATTGATGAGTACCATAGGAGAGATGATAGATCACCCCAAAGCTAAGGATCACATAGATGCATATTTTGAGAGGATGACTAAACTATCTAATAACATGAAGCTGTCATCCAGGGTTAGATTCATGTTGAAAGACGCAATTGATTTGAGAAAGGATAAATGGCAACTGAGGAGAAAAGTTGAAGGGCCCAAAAAAATTGATGAAGTGCACAGGGACGCCGTTCAAGAACGTCAAGCACAAACTAGCAGATTTGGCCGTGGTCCTGGAATCAATGCATCATTGAGGAGGGGAATGTCCATGGATTTCGGTTCTAGAGCATTTGGACTATTGCCTTCTCCAAAGGTCCAGGCTGGTGGTTTTCAAGGCAGGCAAGACATTCGCTTTGAAGGAAAACAACAGTCTTGTGAGGCCAAGGCAATCCCAGTTTCATTGCCACTAAGACCTATTAGTGATGATGCTATCACTTTGGGACCCCACAGTAATCTAGCTCGAGGAATGTCTAGTAGAGGGCCACGGTCAGTTTCATCCACATCATTAGAAGATTTGAACTTACCGAATGGTAATAACTCCCAAAGGATGACGGCTGCTTTAAGTTCTAACTCCAAAGGGGACATCAGTTCAAGAAATTTGCCACAGGAACATGGTTTTGCTAATGGACACAGGCAATTGGGTAACATTGATAGATGTCTTGGTAGGTCTCAATCACTCAAATATGAACAACCAGCTTTGACACCAAATGATCGTTCTGAAGTTATGTCCAAAGAATGCCTACGGGAAAAGTCCATAGCAGCTATTAGGGAATATTACAGTGCTAGAGATGAGAAGGAAGTTACTCTGTGCATCAAGGATTTGAATTCGCCGGGATTCCATTCATCCATGGTTTCTCTTTGGGTCACAGACTCGTTTGAGAGAGAAAACGTAGAAAGAGATCTTTTAACTAAGCTTCTTGTTAGCCTCACCAGATCAAAGGATGGCACATTGACTCAACTTCAACTTGCCAAAGGAATCCAACATGTTCTTACCGCACTGGAGGATGCTGTGAATGATGCCCCCAAAGCTCCAGAATTTATGGGGAAATTACTGGCAAACCTGATGTGGGAAAATTTGATTCCATTGAAAGAAATTGGAAAGTTTATATATGAAGGTGGAGAGGAACCTGGGAGTCTTCTAGAAGCTGGGCTTGCAGCTGATGTTCTTGGAAACTTGTTGGAGGCACTTCAATTGGAGAAAGGTCAGATTTTTGTTAACCAAATTCTTAAAACTTCTGATCTAAAATTGGACTCATTTTGCCCTTCCTATCCAATCAAATCAACCAAATTAGGGAAATTTATTTAG 3900 41.28 MSFNQSRRHKDEDSQFKKSARSSSFNQQRSSNHSFKQSNGAQHERESRAGGSSVGSTVSTAPRGGENGSHVQSQQNGSASNSTKLTGFQSGDVKKNETSQTTSRTSNEISESKSGIVQNNATSKSTLKTSVANASSTVFKDLRGQHNTFPLQFGSLSPGFQAQYHSVKSVPSESVLPVPRQPIAKSESNVCGKLNIGKSNPEPETKREMQVSAGAPLNQNQKPTVISHPASSESMSLVHHIANAPNVNEVQVHDLISTSSAAKDVAIQPPLGSLMQVIDSCPKESLSSSNSIKANDKISGNEELIQLPSQVGFHTSQDLVSQNRNSYSDSVVSETIKTSESNAVERGGSSNEGSRAEFSVEPVSSHAEVDSTKDNNDLSNSITHGYNTSLTIASSYQSDSNKNTEMGQANLQSDPNFIPSVEDNPVVSVNKRRNTSKRGKKKRKEILRKADAAGTTSDLYMAYKESEDKKETIMSAEISNENLNMNLESAGSIKEEVVLTKTDVQSKLEPDDWEDAVDIPVVKLKHEDAGEDMAKKYSKDFLLKFAEKFMDLPEGFEITPHMKALISTNHGSCSVNSANLGKIDKKNGGSCLDHRASTVDDRLFALERDLHLDRARPTQGDINGALKNSRAYIGSQGKIQRNGSSSDRWQKDTKFQMNGLISPTPLQMKHRTENKYEVGKVADEEETKQRKLKAILNKLTPQNFEKLFEQVRAVNIDNSKTLSGVISQIFDKALMEPTFCEMYANFCLHLAGELPDFSNDNQKITFKRLLLNKCQEEFERDQEESDEINKVSEMQSSEEQEAKRLKARRRMLGNIRLIGELYKKKMITEKIMHECIKKLLSQYQNPDEEDIEALCKLMSTIGEMIDHPKAKDHIDAYFERMTKLSNNMKLSSRVRFMLKDAIDLRKDKWQLRRKVEGPKKIDEVHRDAVQERQAQTSRFGRGPGINASLRRGMSMDFGSRAFGLLPSPKVQAGGFQGRQDIRFEGKQQSCEAKAIPVSLPLRPISDDAITLGPHSNLARGMSSRGPRSVSSTSLEDLNLPNGNNSQRMTAALSSNSKGDISSRNLPQEHGFANGHRQLGNIDRCLGRSQSLKYEQPALTPNDRSEVMSKECLREKSIAAIREYYSARDEKEVTLCIKDLNSPGFHSSMVSLWVTDSFERENVERDLLTKLLVSLTRSKDGTLTQLQLAKGIQHVLTALEDAVNDAPKAPEFMGKLLANLMWENLIPLKEIGKFIYEGGEEPGSLLEAGLAADVLGNLLEALQLEKGQIFVNQILKTSDLKLDSFCPSYPIKSTKLGKFI 1299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2042994 2058047 + Sed0024848.1 Sed12g0327 731283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0327 1299 ProSiteProfiles MI domain profile. 1111 1235 IPR003891 -
Sed12g0327 1299 SUPERFAMILY ARM repeat 682 910 IPR016024 -
Sed12g0327 1299 SMART ma3_7 1112 1226 IPR003891 -
Sed12g0327 1299 FunFam Eukaryotic translation initiation factor 4G 1105 1298 - -
Sed12g0327 1299 Gene3D - 1103 1299 - -
Sed12g0327 1299 MobiDBLite consensus disorder prediction 398 445 - -
Sed12g0327 1299 MobiDBLite consensus disorder prediction 1 130 - -
Sed12g0327 1299 Gene3D - 689 921 - -
Sed12g0327 1299 MobiDBLite consensus disorder prediction 324 382 - -
Sed12g0327 1299 FunFam Eukaryotic translation initiation factor 4G 689 921 - -
Sed12g0327 1299 MobiDBLite consensus disorder prediction 19 130 - -
Sed12g0327 1299 MobiDBLite consensus disorder prediction 1010 1068 - -
Sed12g0327 1299 SMART if4_15 689 908 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed12g0327 1299 MobiDBLite consensus disorder prediction 324 358 - -
Sed12g0327 1299 MobiDBLite consensus disorder prediction 1021 1068 - -
Sed12g0327 1299 SUPERFAMILY ARM repeat 1107 1289 IPR016024 -
Sed12g0327 1299 Coils Coil 771 808 - -
Sed12g0327 1299 MobiDBLite consensus disorder prediction 1 18 - -
Sed12g0327 1299 MobiDBLite consensus disorder prediction 398 419 - -
Sed12g0327 1299 Pfam MIF4G domain 689 908 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Sed12g0327 1299 MobiDBLite consensus disorder prediction 781 803 - -
Sed12g0327 1299 Pfam MA3 domain 1113 1225 IPR003891 -
Sed12g0327 1299 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 217 1288 IPR045208 GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0016281(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0327 Sed-Chr12:2042994 Sed13g1954 Sed-Chr13:24441564 3.10E-53 dispersed
Sed12g0327 Sed-Chr12:2042994 Sed04g2118 Sed-Chr4:35355020 5.10E-242 wgd
Sed12g0327 Sed-Chr12:2042994 Sed09g0152 Sed-Chr9:1177059 3.70E-248 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0327 K03260 - csv:101222372 1530.38