Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0380 ATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTACTCCGCCGTTACGGCGCTGCCGATCGACGGCGGCGGCGGCGGCCACCGCAAGTTTCAGGGTGCTCTCGACGGAGCGAATCTTTCCGGCGACGGTTGTTTGGTTCTTACGTCGGATCCGAAGCCGCGCCTCCGGTGGACGGCGGAGCTTCATGACCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAAGGCAACCCCAAAAACAATTTTGAGAACAATGGGAGTAAAAGGTCTCACTCTTTATCACTTAAAATCACACCTTCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACTGAGAACTCAAAGGATGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGTTCCTCTTCATCGCCATCTTCGAGAATAATGACACAGGATGTAAATGACGGTTTCCAAGTAACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGTTGGAGGTGCAGCACCATCTTCAACTTCGCATTGAAGCACAGGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGCCAAGCATTGAGCGATCAGACTGCAGCGTCTGCGGGGCTCGAAGCTGCAAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTTTCAAATGACTCTAAAGAGATGGCACCATTGGAGTCTCAAAAAGTGCTTCCATTCTCAGAACTTGCTGCTGCTCTAGAAAACTGTAAAGCTCCTACTGATACGGCTCGAATGGGCGATTGCTCCATGGATTGCCGTCTGACATCAGCTGGGAACTCGGTTTCCCCAACCAATGTAGGATCAACTGCCACCGCATTGAAAAGACTGAGACCAGTTTTTAGTCATGGAGATTCGATGGCTCTCGAGGGCAGTTCACGGCACGAAGTCGAATGGATGATGAGTAACATTGGATGA 957 50.99 MLSGFSQEPAGMYSAVTALPIDGGGGGHRKFQGALDGANLSGDGCLVLTSDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCMAESQETSSSSSPSSRIMTQDVNDGFQVTEALRVQMEVQRRLHEQLEVQHHLQLRIEAQGKYLQSILERACQALSDQTAASAGLEAAREELSELAIKVSNDSKEMAPLESQKVLPFSELAAALENCKAPTDTARMGDCSMDCRLTSAGNSVSPTNVGSTATALKRLRPVFSHGDSMALEGSSRHEVEWMMSNIG 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2306597 2310942 - Sed0020367.1 Sed12g0380 731336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0380 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 110 IPR017930 -
Sed12g0380 318 NCBIfam myb-like DNA-binding domain, SHAQKYF class 53 108 IPR006447 GO:0003677(InterPro)
Sed12g0380 318 Pfam Myb-like DNA-binding domain 55 106 IPR001005 -
Sed12g0380 318 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 35 297 IPR046955 GO:0003700(InterPro)
Sed12g0380 318 MobiDBLite consensus disorder prediction 116 142 - -
Sed12g0380 318 Gene3D - 52 111 - -
Sed12g0380 318 Coils Coil 208 228 - -
Sed12g0380 318 MobiDBLite consensus disorder prediction 117 142 - -
Sed12g0380 318 FunFam Myb family transcription factor 52 110 - -
Sed12g0380 318 Pfam MYB-CC type transfactor, LHEQLE motif 151 196 IPR025756 -
Sed12g0380 318 SUPERFAMILY Homeodomain-like 53 110 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g3314 Sed-Chr5:42487955 Sed12g0380 Sed-Chr12:2306597 6.80E-43 dispersed
Sed05g3315 Sed-Chr5:42487955 Sed12g0380 Sed-Chr12:2306597 7.30E-19 dispersed
Sed12g0380 Sed-Chr12:2306597 Sed12g0382 Sed-Chr12:2306597 2.20E-101 dispersed
Sed12g0380 Sed-Chr12:2306597 Sed12g0381 Sed-Chr12:2306597 2.10E-88 tandem
Sed05g0239 Sed-Chr5:1425110 Sed12g0380 Sed-Chr12:2306597 5.90E-33 transposed
Sed12g0380 Sed-Chr12:2306597 Sed02g1495 Sed-Chr2:50894519 4.00E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40103 PF00249 Myb_DNA-binding 2.80E-07 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0380 - - - 0.0