Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0381 | ATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTACTCCGCCGTTACGGCGCTGCCGATCGACGGCGGCGGCGGCGGCCACCGCAAGTTTCAGGGTGCTCTCGACGGAGCGAATCTTTCCGGCGACGGTTGTTTGGTTCTTACGTCGGATCCGAAGCCGCGCCTCCGGTGGACGGCGGAGCTTCATGACCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAAGGCAACCCCAAAAACAATTTTGAGAACAATGGGAGTAAAAGGTCTCACTCTTTATCACTTAAAATCACACCTTCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACTGAGAACTCAAAGGATGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGTTCCTCTTCATCGCCATCTTCGAGAATAATGACACAGGATGTAAATGACGGTTTCCAAGTAACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGTTGGAGGTTAGCTCTATTTTGTTTTGTCTGAATAGAGACAGCGTTTACTCGAAACTGCTGCAACTCCATGCTTTTACTGTAATTAGGTGCAGCACCATCTTCAACTTCGCATTGAAGCACAGGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGCCAAGCATTGA | 675 | 50.67 | MLSGFSQEPAGMYSAVTALPIDGGGGGHRKFQGALDGANLSGDGCLVLTSDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCMAESQETSSSSSPSSRIMTQDVNDGFQVTEALRVQMEVQRRLHEQLEVSSILFCLNRDSVYSKLLQLHAFTVIRCSTIFNFALKHRANTCSRYSSGLAKH | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2306597 | 2310942 | - | Sed0020367.2 | Sed12g0381 | 731337 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0381 | 224 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 35 | 174 | IPR046955 | GO:0003700(InterPro) | |
Sed12g0381 | 224 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 53 | 108 | IPR006447 | GO:0003677(InterPro) | |
Sed12g0381 | 224 | Pfam | Myb-like DNA-binding domain | 55 | 106 | IPR001005 | - | |
Sed12g0381 | 224 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 50 | 110 | IPR017930 | - | |
Sed12g0381 | 224 | Gene3D | - | 52 | 111 | - | - | |
Sed12g0381 | 224 | Pfam | MYB-CC type transfactor, LHEQLE motif | 151 | 172 | IPR025756 | - | |
Sed12g0381 | 224 | SUPERFAMILY | Homeodomain-like | 53 | 110 | IPR009057 | - | |
Sed12g0381 | 224 | FunFam | Myb family transcription factor | 52 | 110 | - | - | |
Sed12g0381 | 224 | MobiDBLite | consensus disorder prediction | 118 | 142 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g0239 | Sed-Chr5:1425110 | Sed12g0381 | Sed-Chr12:2306597 | 2.70E-30 | dispersed | |
Sed12g0381 | Sed-Chr12:2306597 | Sed14g1265 | Sed-Chr14:21700203 | 4.50E-37 | dispersed | |
Sed12g0380 | Sed-Chr12:2306597 | Sed12g0381 | Sed-Chr12:2306597 | 2.10E-88 | tandem | |
Sed12g0381 | Sed-Chr12:2306597 | Sed12g0382 | Sed-Chr12:2306597 | 8.00E-26 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40104 | PF00249 | Myb_DNA-binding | 1.60E-07 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0381 | - | - | - | 0.0 |