Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0381 ATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTACTCCGCCGTTACGGCGCTGCCGATCGACGGCGGCGGCGGCGGCCACCGCAAGTTTCAGGGTGCTCTCGACGGAGCGAATCTTTCCGGCGACGGTTGTTTGGTTCTTACGTCGGATCCGAAGCCGCGCCTCCGGTGGACGGCGGAGCTTCATGACCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAAGGCAACCCCAAAAACAATTTTGAGAACAATGGGAGTAAAAGGTCTCACTCTTTATCACTTAAAATCACACCTTCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACTGAGAACTCAAAGGATGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGTTCCTCTTCATCGCCATCTTCGAGAATAATGACACAGGATGTAAATGACGGTTTCCAAGTAACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGTTGGAGGTTAGCTCTATTTTGTTTTGTCTGAATAGAGACAGCGTTTACTCGAAACTGCTGCAACTCCATGCTTTTACTGTAATTAGGTGCAGCACCATCTTCAACTTCGCATTGAAGCACAGGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGCCAAGCATTGA 675 50.67 MLSGFSQEPAGMYSAVTALPIDGGGGGHRKFQGALDGANLSGDGCLVLTSDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCMAESQETSSSSSPSSRIMTQDVNDGFQVTEALRVQMEVQRRLHEQLEVSSILFCLNRDSVYSKLLQLHAFTVIRCSTIFNFALKHRANTCSRYSSGLAKH 224
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 2306597 2310942 - Sed0020367.2 Sed12g0381 731337
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0381 224 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 35 174 IPR046955 GO:0003700(InterPro)
Sed12g0381 224 NCBIfam myb-like DNA-binding domain, SHAQKYF class 53 108 IPR006447 GO:0003677(InterPro)
Sed12g0381 224 Pfam Myb-like DNA-binding domain 55 106 IPR001005 -
Sed12g0381 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 110 IPR017930 -
Sed12g0381 224 Gene3D - 52 111 - -
Sed12g0381 224 Pfam MYB-CC type transfactor, LHEQLE motif 151 172 IPR025756 -
Sed12g0381 224 SUPERFAMILY Homeodomain-like 53 110 IPR009057 -
Sed12g0381 224 FunFam Myb family transcription factor 52 110 - -
Sed12g0381 224 MobiDBLite consensus disorder prediction 118 142 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0239 Sed-Chr5:1425110 Sed12g0381 Sed-Chr12:2306597 2.70E-30 dispersed
Sed12g0381 Sed-Chr12:2306597 Sed14g1265 Sed-Chr14:21700203 4.50E-37 dispersed
Sed12g0380 Sed-Chr12:2306597 Sed12g0381 Sed-Chr12:2306597 2.10E-88 tandem
Sed12g0381 Sed-Chr12:2306597 Sed12g0382 Sed-Chr12:2306597 8.00E-26 tandem
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40104 PF00249 Myb_DNA-binding 1.60E-07 CL0123 Sed TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0381 - - - 0.0