Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sed12g0381	ATGCTCTCTGGGTTTTCTCAGGAACCGGCCGGAATGTACTCCGCCGTTACGGCGCTGCCGATCGACGGCGGCGGCGGCGGCCACCGCAAGTTTCAGGGTGCTCTCGACGGAGCGAATCTTTCCGGCGACGGTTGTTTGGTTCTTACGTCGGATCCGAAGCCGCGCCTCCGGTGGACGGCGGAGCTTCATGACCGATTTGTCGACGCCGTCACTCAGCTCGGCGGCCCTGACAAGGCAACCCCAAAAACAATTTTGAGAACAATGGGAGTAAAAGGTCTCACTCTTTATCACTTAAAATCACACCTTCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCGACTGAGAACTCAAAGGATGCTTCTTGTATGGCAGAAAGTCAAGAAACAAGTTCCTCTTCATCGCCATCTTCGAGAATAATGACACAGGATGTAAATGACGGTTTCCAAGTAACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGTTGGAGGTTAGCTCTATTTTGTTTTGTCTGAATAGAGACAGCGTTTACTCGAAACTGCTGCAACTCCATGCTTTTACTGTAATTAGGTGCAGCACCATCTTCAACTTCGCATTGAAGCACAGGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGCCAAGCATTGA	675	50.67	MLSGFSQEPAGMYSAVTALPIDGGGGGHRKFQGALDGANLSGDGCLVLTSDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTILRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCMAESQETSSSSSPSSRIMTQDVNDGFQVTEALRVQMEVQRRLHEQLEVSSILFCLNRDSVYSKLLQLHAFTVIRCSTIFNFALKHRANTCSRYSSGLAKH	224

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
12	2306597	2310942	-	Sed0020367.2	Sed12g0381	731337

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sed12g0381	224	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL11	35	174	IPR046955	GO:0003700(InterPro)
	Sed12g0381	224	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	53	108	IPR006447	GO:0003677(InterPro)
	Sed12g0381	224	Pfam	Myb-like DNA-binding domain	55	106	IPR001005	-
	Sed12g0381	224	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	50	110	IPR017930	-
	Sed12g0381	224	Gene3D	-	52	111	-	-
	Sed12g0381	224	Pfam	MYB-CC type transfactor, LHEQLE motif	151	172	IPR025756	-
	Sed12g0381	224	SUPERFAMILY	Homeodomain-like	53	110	IPR009057	-
	Sed12g0381	224	FunFam	Myb family transcription factor	52	110	-	-
	Sed12g0381	224	MobiDBLite	consensus disorder prediction	118	142	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Sed05g0239	Sed-Chr5:1425110	Sed12g0381	Sed-Chr12:2306597	2.70E-30	dispersed
	Sed12g0381	Sed-Chr12:2306597	Sed14g1265	Sed-Chr14:21700203	4.50E-37	dispersed
	Sed12g0380	Sed-Chr12:2306597	Sed12g0381	Sed-Chr12:2306597	2.10E-88	tandem
	Sed12g0381	Sed-Chr12:2306597	Sed12g0382	Sed-Chr12:2306597	8.00E-26	tandem

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	40104	PF00249	Myb_DNA-binding	1.60E-07	CL0123	Sed	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sed12g0381	-		-	-	0.0