Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0390 ATGGGTAGCTCCGAAAAGATCTTCACCTTGAAGGAAGTCGCCGAGCACAACAATCACAAGGATTGTTGGCTCATCATCAGCGGCAAGGTTTACGATGTGACCAAATTCTTAGAAGATCATCCTGGTGGCGATGATGTTTTGTTATCAGCTACAGGAAAGGATGCAACCGATGATTTCGAAGATGTGGGGCACAGCGACAATGCTAGAGAAATGATGGATCAATACTATGTGGGTGAGATTGATGCTTCAACCATTCCGAAGAAGGTTGCGTACACACCTCCGAAACAGCCTCATTACAATCAGGACAAGACGTCGGAGTTCATCATCAAGCTTCTCCAGTTCCTCGTTCCACTTGCGATTTTGGGATTGGCTGTCGCCATTCGCTTCTACACCAAACAAGCTTAA 405 46.17 MGSSEKIFTLKEVAEHNNHKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2347770 2350388 - Sed0000537.1 Sed12g0390 731346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0390 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Sed12g0390 134 SMART Cyt_b5_2 8 81 IPR001199 -
Sed12g0390 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 90 IPR036400 -
Sed12g0390 134 PANTHER CYTOCHROME B5 4 131 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Sed12g0390 134 FunFam Cytochrome b5 type B 2 85 - -
Sed12g0390 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Sed12g0390 134 Gene3D - 1 86 IPR036400 -
Sed12g0390 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Sed12g0390 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Sed12g0390 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Sed12g0390 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Sed12g0390 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1490 Sed-Chr2:50846964 Sed12g0390 Sed-Chr12:2347770 1.80E-73 dispersed
Sed02g1783 Sed-Chr2:52493553 Sed12g0390 Sed-Chr12:2347770 8.40E-39 dispersed
Sed04g2259 Sed-Chr4:36302496 Sed12g0390 Sed-Chr12:2347770 5.00E-11 dispersed
Sed04g2296 Sed-Chr4:36654184 Sed12g0390 Sed-Chr12:2347770 7.60E-29 dispersed
Sed05g0197 Sed-Chr5:1203376 Sed12g0390 Sed-Chr12:2347770 5.20E-49 dispersed
Sed05g0198 Sed-Chr5:1203376 Sed12g0390 Sed-Chr12:2347770 2.70E-39 dispersed
Sed05g0385 Sed-Chr5:2623399 Sed12g0390 Sed-Chr12:2347770 4.70E-50 dispersed
Sed05g0386 Sed-Chr5:2623399 Sed12g0390 Sed-Chr12:2347770 4.70E-50 dispersed
Sed09g0019 Sed-Chr9:205732 Sed12g0390 Sed-Chr12:2347770 1.20E-09 dispersed
Sed12g0066 Sed-Chr12:380413 Sed12g0390 Sed-Chr12:2347770 3.10E-37 dispersed
Sed04g0087 Sed-Chr4:515399 Sed12g0390 Sed-Chr12:2347770 1.00E-28 transposed
Sed12g0390 Sed-Chr12:2347770 Sed04g2056 Sed-Chr4:34967221 1.10E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0390 K23490 - csv:101214209 272.707