Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0390 ATGGGTAGCTCCGAAAAGATCTTCACCTTGAAGGAAGTCGCCGAGCACAACAATCACAAGGATTGTTGGCTCATCATCAGCGGCAAGGTTTACGATGTGACCAAATTCTTAGAAGATCATCCTGGTGGCGATGATGTTTTGTTATCAGCTACAGGAAAGGATGCAACCGATGATTTCGAAGATGTGGGGCACAGCGACAATGCTAGAGAAATGATGGATCAATACTATGTGGGTGAGATTGATGCTTCAACCATTCCGAAGAAGGTTGCGTACACACCTCCGAAACAGCCTCATTACAATCAGGACAAGACGTCGGAGTTCATCATCAAGCTTCTCCAGTTCCTCGTTCCACTTGCGATTTTGGGATTGGCTGTCGCCATTCGCTTCTACACCAAACAAGCTTAA 405 46.17 MGSSEKIFTLKEVAEHNNHKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2347770 2350388 - Sed0000537.1 Sed12g0390 731346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0390 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Sed12g0390 134 SMART Cyt_b5_2 8 81 IPR001199 -
Sed12g0390 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 90 IPR036400 -
Sed12g0390 134 PANTHER CYTOCHROME B5 4 131 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Sed12g0390 134 FunFam Cytochrome b5 type B 2 85 - -
Sed12g0390 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Sed12g0390 134 Gene3D - 1 86 IPR036400 -
Sed12g0390 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Sed12g0390 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Sed12g0390 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Sed12g0390 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Sed12g0390 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0390 K23490 - - csv:101214209 272.707
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1490 Sed-Chr2:50846964 Sed12g0390 Sed-Chr12:2347770 1.80E-73 dispersed
Sed02g1783 Sed-Chr2:52493553 Sed12g0390 Sed-Chr12:2347770 8.40E-39 dispersed
Sed04g2259 Sed-Chr4:36302496 Sed12g0390 Sed-Chr12:2347770 5.00E-11 dispersed
Sed04g2296 Sed-Chr4:36654184 Sed12g0390 Sed-Chr12:2347770 7.60E-29 dispersed
Sed05g0197 Sed-Chr5:1203376 Sed12g0390 Sed-Chr12:2347770 5.20E-49 dispersed
Sed05g0198 Sed-Chr5:1203376 Sed12g0390 Sed-Chr12:2347770 2.70E-39 dispersed
Sed05g0385 Sed-Chr5:2623399 Sed12g0390 Sed-Chr12:2347770 4.70E-50 dispersed
Sed05g0386 Sed-Chr5:2623399 Sed12g0390 Sed-Chr12:2347770 4.70E-50 dispersed
Sed09g0019 Sed-Chr9:205732 Sed12g0390 Sed-Chr12:2347770 1.20E-09 dispersed
Sed12g0066 Sed-Chr12:380413 Sed12g0390 Sed-Chr12:2347770 3.10E-37 dispersed
Sed04g0087 Sed-Chr4:515399 Sed12g0390 Sed-Chr12:2347770 1.00E-28 transposed
Sed12g0390 Sed-Chr12:2347770 Sed04g2056 Sed-Chr4:34967221 1.10E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g0386 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed05g0385 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed01g3465 . 1 134 NADPH P450 reductases AT5G53560 75.4 3.1e-57 218.8
Sed02g1490 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.9e-51 199.5
Sed12g0390 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.5e-51 199.1
Sed04g2056 . 1 133 NADPH P450 reductases AT5G53560 61.7 9.3e-46 180.6
Sed05g0197 . 5 131 NADPH P450 reductases AT5G53560 65.4 1.2e-45 180.3
Sed02g1783 . 1 134 NADPH P450 reductases AT5G53560 56.0 4.5e-40 161.8
Sed01g3466 . 1 98 NADPH P450 reductases AT5G53560 73.5 5.5e-38 154.8
Sed05g0198 . 14 124 NADPH P450 reductases AT5G53560 65.8 7.1e-38 154.5
Sed12g0390 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.4e-47 186.8
Sed02g1490 . 1 132 NADPH P450 reductases AT5G48810 63.4 1.8e-47 186.4
Sed04g2056 . 1 133 NADPH P450 reductases AT5G48810 58.5 3.1e-44 175.6
Sed01g3465 . 1 134 NADPH P450 reductases AT5G48810 58.1 7.0e-44 174.5
Sed05g0197 . 5 131 NADPH P450 reductases AT5G48810 62.0 9.1e-44 174.1
Sed05g0386 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed05g0385 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed02g1783 . 1 134 NADPH P450 reductases AT5G48810 52.2 2.8e-37 152.5
Sed12g0390 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.3e-50 196.8
Sed02g1490 . 22 133 NADPH P450 reductases AT2G32720 83.0 2.1e-50 196.1
Sed04g2056 . 22 133 NADPH P450 reductases AT2G32720 76.8 5.4e-46 181.4
Sed05g0198 . 14 125 NADPH P450 reductases AT2G32720 70.5 1.8e-41 166.4
Sed05g0197 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.5e-40 163.3
Sed05g0386 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed05g0385 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed01g3465 . 22 133 NADPH P450 reductases AT2G32720 63.4 1.2e-37 153.7
Sed03g2083 . 2 281 NADPH P450 reductases AT5G17770 79.3 1.8e-128 456.4
Sed02g0277 . 2 280 NADPH P450 reductases AT5G17770 73.1 9.1e-120 427.6
Sed05g1022 . 1 282 NADPH P450 reductases AT5G17770 68.9 1.2e-114 410.6
Sed05g0386 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed05g0385 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed01g3465 . 1 134 NADPH P450 reductases AT5G53560 75.4 3.1e-57 218.8
Sed02g1490 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.9e-51 199.5
Sed12g0390 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.5e-51 199.1
Sed04g2056 . 1 133 NADPH P450 reductases AT5G53560 61.7 9.3e-46 180.6
Sed05g0197 . 5 131 NADPH P450 reductases AT5G53560 65.4 1.2e-45 180.3
Sed02g1783 . 1 134 NADPH P450 reductases AT5G53560 56.0 4.5e-40 161.8
Sed01g3466 . 1 98 NADPH P450 reductases AT5G53560 73.5 5.5e-38 154.8
Sed05g0198 . 14 124 NADPH P450 reductases AT5G53560 65.8 7.1e-38 154.5
Sed12g0390 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.4e-47 186.8
Sed02g1490 . 1 132 NADPH P450 reductases AT5G48810 63.4 1.8e-47 186.4
Sed04g2056 . 1 133 NADPH P450 reductases AT5G48810 58.5 3.1e-44 175.6
Sed01g3465 . 1 134 NADPH P450 reductases AT5G48810 58.1 7.0e-44 174.5
Sed05g0197 . 5 131 NADPH P450 reductases AT5G48810 62.0 9.1e-44 174.1
Sed05g0386 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed05g0385 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed02g1783 . 1 134 NADPH P450 reductases AT5G48810 52.2 2.8e-37 152.5
Sed12g0390 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.3e-50 196.8
Sed02g1490 . 22 133 NADPH P450 reductases AT2G32720 83.0 2.1e-50 196.1
Sed04g2056 . 22 133 NADPH P450 reductases AT2G32720 76.8 5.4e-46 181.4
Sed05g0198 . 14 125 NADPH P450 reductases AT2G32720 70.5 1.8e-41 166.4
Sed05g0197 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.5e-40 163.3
Sed05g0386 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed05g0385 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed01g3465 . 22 133 NADPH P450 reductases AT2G32720 63.4 1.2e-37 153.7
Sed03g2083 . 2 281 NADPH P450 reductases AT5G17770 79.3 1.8e-128 456.4
Sed02g0277 . 2 280 NADPH P450 reductases AT5G17770 73.1 9.1e-120 427.6
Sed05g1022 . 1 282 NADPH P450 reductases AT5G17770 68.9 1.2e-114 410.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156