Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0408 ATGACATGGACATGGATTGCCCTAGTTTTGGTCTTAACTTGGGTGGAAGCCGATGATCGGCGGATTCCGTCCACTCTCGACGGCCCATTTCTGCCGGTTACTCGGCGATTTGATCCGTATTTGAGGCGTGGAAGTGAGGATTTGCCCATGGATCATCCAAGGTTGCGGAAGAGTGTTTTGTCGAATTTTCCTGAACAGATTTCGCTTGCGATTTCCACTCCGAGCTCCATGTGGGTTTCTTGGGTTACAGGGGATGCTCAGATTGGCAAAAATGTGACTGAACTGGATCCGTCGTCTGTTGCGAGTGAGGTTTGGTATGGAAAAGAAAGTGGAAAGTACACGAGTGTGAGACGGGGGGTTTCGACTGTGTACAGTCAGCTATATCCATATGAAGGGCTACTTAATTACACTTCTGGCATCATTCATCATGTCAAAATCGACGGTCTCGAGCCTAAAACCAAGTACTATTACCGTTGTGGAGATAGTTCTATTTCAGTCATGAGCAAAGAGCACATCTTTGAGACTTTACCATTGCCAAGCAAGAACTCCTATCCTCGTAGAATAGCCATCGTTGGAGACTTGGGTCTTACTACGAATTCAACGACCACCATTGATCATCTGGTTAAGAATGATCCTTCTCTGATCTTGATGATAGGAGATTTGACTTATGCAAATCAATACCTCACAACTGGTGGCAAAGGAGCTTCATGCTTTTCATGTGCATTTCCAGATGCCCCAATTAGAGAGACATATCAACCCCGTTGGGACGGGTGGGGAAGGTTTATGGAGCCACTGACTTCAAGAGTTCCGATGATGGTTATCGAGGGGAACCACGAGATTGAGCCACAAATTTCTGGGATCACTTTTAAATCATATTTGACAAGGTTTGCAGTGCCCTCTGCTGAGAGTGGCTCGAACAGTAGCTTCTACTACTCATTCAATGCCGGAGGAGTTCATTTTCTTATGTTGGGAGCATATGTTGATTATAACGCTACTGGTGCTCAGTATGCTTGGCTGAAAGAAGATCTCGATAAAGTGGATCGTGCAGTGACCCCGTGGTTAGTAGCTGCCTGGCATCCTCCATGGTACAATAGCTATTCTTCCCATTACCAAGAATTTGAATGCATGCGCCAAGAGATGGAACAACTTCTTTACGAGCATGGTGTCGATATTGTTTTTTCTGGTCATGTACATGCCTATGAGCGCATGAACAGAGTGTACAACTATACACTGGATCCTTGCGGCCCAGTTTATATAACAGTTGGAGATGGTGGAAACATTGAGAAGGTTGACGTGGACCATGCCGACGATCCCGGAAAGTGTCCTTCAGCTGGAGATAACATTCCCGAATTTGGAGGAATGTGTCGTTTGAACTATTCTTCTGGTCCAGCAGTGGGAAAGTTTTGTTGGAACACCCAACCTGAGTGGAGTGCTTTTAGAGAAAGCAGCTTTGGTCATGGAACAGTTGAGGTTACAAATTCAACGCATGCATTGTGGACTTGGCACCGGAATCAAGATGTGTACAAGGAAGATAGCCATGGAGATCAAGTATACATCGTCCGACAACCTGAGTTGTGCTCTCAAACTACCAAGGTTACTTCTTCAACAAAACTATCTTGA 1620 45.43 MTWTWIALVLVLTWVEADDRRIPSTLDGPFLPVTRRFDPYLRRGSEDLPMDHPRLRKSVLSNFPEQISLAISTPSSMWVSWVTGDAQIGKNVTELDPSSVASEVWYGKESGKYTSVRRGVSTVYSQLYPYEGLLNYTSGIIHHVKIDGLEPKTKYYYRCGDSSISVMSKEHIFETLPLPSKNSYPRRIAIVGDLGLTTNSTTTIDHLVKNDPSLILMIGDLTYANQYLTTGGKGASCFSCAFPDAPIRETYQPRWDGWGRFMEPLTSRVPMMVIEGNHEIEPQISGITFKSYLTRFAVPSAESGSNSSFYYSFNAGGVHFLMLGAYVDYNATGAQYAWLKEDLDKVDRAVTPWLVAAWHPPWYNSYSSHYQEFECMRQEMEQLLYEHGVDIVFSGHVHAYERMNRVYNYTLDPCGPVYITVGDGGNIEKVDVDHADDPGKCPSAGDNIPEFGGMCRLNYSSGPAVGKFCWNTQPEWSAFRESSFGHGTVEVTNSTHALWTWHRNQDVYKEDSHGDQVYIVRQPELCSQTTKVTSSTKLS 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2445716 2451170 - Sed0005341.2 Sed12g0408 731364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0408 539 Gene3D - 454 530 IPR029052 -
Sed12g0408 539 Gene3D - 182 452 IPR029052 -
Sed12g0408 539 Pfam Purple acid Phosphatase, N-terminal domain 64 175 IPR015914 GO:0003993(InterPro)|GO:0046872(InterPro)
Sed12g0408 539 SUPERFAMILY Metallo-dependent phosphatases 186 506 IPR029052 -
Sed12g0408 539 Pfam Iron/zinc purple acid phosphatase-like protein C 466 506 IPR025733 -
Sed12g0408 539 SUPERFAMILY Purple acid phosphatase, N-terminal domain 45 177 IPR008963 GO:0003993(InterPro)|GO:0046872(InterPro)
Sed12g0408 539 PANTHER ACID PHOSPHATASE RELATED 6 532 IPR039331 GO:0003993(InterPro)
Sed12g0408 539 Pfam Calcineurin-like phosphoesterase 187 400 IPR004843 GO:0016787(InterPro)
Sed12g0408 539 CDD MPP_PAPs 184 521 IPR041792 -
Sed12g0408 539 Gene3D - 63 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0408 K22390 - - csv:101206188 998.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0408 Sed-Chr12:2445716 Sed14g0312 Sed-Chr14:3249394 1.00E-79 dispersed
Sed12g0407 Sed-Chr12:2445716 Sed12g0408 Sed-Chr12:2445716 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g848 . . . . . . . . . . . Cma14g01873 . Car14g01675 Sed12g0408 . Cpe03g01571 Bhi01g00061 Tan10g0557 Cmetu06g2760 . . . Lcy11g1746 . . . . . . . . . . Cone4ag0384 Lsi05g01814 Csa02g00942 . Cme06g00409 . Blo07g00296 Bda11g00659 . . . . Bma06g01625 . . Cmo14g01919 . . . . . . . . . . . . . Cla05g00371 Cam05g0404 Cec05g0409 Cco05g0409 Clacu05g0399 Cmu05g0384 Cre05g0446 . Csa03g01127 Chy06g00394 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009299 0 5 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 34