Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0409 ATGGCAATGACAATGGCGGAATCTGGAGGATGGATTCGGTTGTTTCTTCTCGTGGTGTTCATGTTGTTCATCGGAGCAATTGCAAGAGTTCCTAAAGAGATTCCTGAAATTCACAATGGAGCAGCTGAGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGAACGAGGTTGAAGCTCACGGTAATAAGCATGCCGTTGACAACCCTGAAGAGATTGCTGCCATGGTTGACATGAGTATCCGCAATGCAACTGCTAGGAGGGAGCTTGGTTTCTTCTCGTGTGGAACCGGTAATCCAATCGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGTAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGCGGTCGTGACGGTCAATTCTACGTCGTAACCGATTCTGGCGATGACGACCCTGTCAACCCAAGGCCAGGCACGCTGCGTTATGCCGTCATTCAGGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCATCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTTAGGAGCTCACCCAGCCACTACGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTCGGGTCGAGTCACATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCTCCAACAATTACTTCACCCACCACAATGAGGTAATGCTATTGGGGCACAGTGATTCTTACTTTAGAGATAAACAAATGCAAGTGACTATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTCGACACGGATACTTCCACGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAGATCCAACCATCAATAGCCAGGGTAACAGATATGCCGCTCCAACCAACCCTTTCGCAAAAGAGGTAACCAAGAGGGTTGAGACAGCTGAGTCCCAGTGGAAAGGCTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCATTCCATCTGGTGCAGGGGCCTCAGCTAGCTATGCCAGAGCCTCGAGTTTGGGAGCTAAACCTTCATCCATGGTTGGTTCCATAACATCGAACGCCGGTGCACTTACCTGCCGGAGTGGCCGTGCTTGCTAG 1350 48.44 MAMTMAESGGWIRLFLLVVFMLFIGAIARVPKEIPEIHNGAAEKLQSSSNSSMAVRLNEVEAHGNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGQFYVVTDSGDDDPVNPRPGTLRYAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYFRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYAAPTNPFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAFFIPSGAGASASYARASSLGAKPSSMVGSITSNAGALTCRSGRAC 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2470045 2475257 + Sed0018537.1 Sed12g0409 731365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0409 449 SUPERFAMILY Pectin lyase-like 77 444 IPR011050 -
Sed12g0409 449 PANTHER PECTATE LYASE 18-RELATED 24 446 IPR045032 GO:0030570(InterPro)
Sed12g0409 449 FunFam Pectate lyase 100 442 - -
Sed12g0409 449 SMART amb_all 175 372 IPR002022 -
Sed12g0409 449 Gene3D - 100 442 IPR012334 -
Sed12g0409 449 Pfam Pectate lyase 186 364 IPR002022 -
Sed12g0409 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Sed12g0409 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Sed12g0409 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Sed12g0409 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Sed12g0409 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Sed12g0409 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Sed12g0409 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Sed12g0409 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1469 Sed-Chr2:50689600 Sed12g0409 Sed-Chr12:2470045 2.30E-209 dispersed
Sed02g1470 Sed-Chr2:50689600 Sed12g0409 Sed-Chr12:2470045 1.10E-209 dispersed
Sed05g0178 Sed-Chr5:1087714 Sed12g0409 Sed-Chr12:2470045 1.10E-190 dispersed
Sed09g0193 Sed-Chr9:1553900 Sed12g0409 Sed-Chr12:2470045 2.10E-203 dispersed
Sed11g0767 Sed-Chr11:14088755 Sed12g0409 Sed-Chr12:2470045 4.40E-132 dispersed
Sed11g0768 Sed-Chr11:14150566 Sed12g0409 Sed-Chr12:2470045 1.70E-95 dispersed
Sed11g1880 Sed-Chr11:33382568 Sed12g0409 Sed-Chr12:2470045 1.80E-161 dispersed
Sed12g0409 Sed-Chr12:2470045 Sed14g0373 Sed-Chr14:3871953 1.30E-149 dispersed
Sed12g0409 Sed-Chr12:2470045 Sed12g0410 Sed-Chr12:2470045 5.60E-212 tandem
Sed01g1572 Sed-Chr1:11423477 Sed12g0409 Sed-Chr12:2470045 8.50E-167 transposed
Sed01g4237 Sed-Chr1:70681923 Sed12g0409 Sed-Chr12:2470045 7.00E-196 wgd
Sed12g0409 Sed-Chr12:2470045 Sed02g1468 Sed-Chr2:50689600 1.10E-231 wgd
Sed12g0409 Sed-Chr12:2470045 Sed04g2044 Sed-Chr4:34840872 6.40E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0409 K01728 - csv:101218188 852.432