Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0409 | ATGGCAATGACAATGGCGGAATCTGGAGGATGGATTCGGTTGTTTCTTCTCGTGGTGTTCATGTTGTTCATCGGAGCAATTGCAAGAGTTCCTAAAGAGATTCCTGAAATTCACAATGGAGCAGCTGAGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGAACGAGGTTGAAGCTCACGGTAATAAGCATGCCGTTGACAACCCTGAAGAGATTGCTGCCATGGTTGACATGAGTATCCGCAATGCAACTGCTAGGAGGGAGCTTGGTTTCTTCTCGTGTGGAACCGGTAATCCAATCGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGTAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGCGGTCGTGACGGTCAATTCTACGTCGTAACCGATTCTGGCGATGACGACCCTGTCAACCCAAGGCCAGGCACGCTGCGTTATGCCGTCATTCAGGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCATCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTTAGGAGCTCACCCAGCCACTACGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTCGGGTCGAGTCACATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCTCCAACAATTACTTCACCCACCACAATGAGGTAATGCTATTGGGGCACAGTGATTCTTACTTTAGAGATAAACAAATGCAAGTGACTATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTCGACACGGATACTTCCACGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAGATCCAACCATCAATAGCCAGGGTAACAGATATGCCGCTCCAACCAACCCTTTCGCAAAAGAGGTAACCAAGAGGGTTGAGACAGCTGAGTCCCAGTGGAAAGGCTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCATTCCATCTGGTGCAGGGGCCTCAGCTAGCTATGCCAGAGCCTCGAGTTTGGGAGCTAAACCTTCATCCATGGTTGGTTCCATAACATCGAACGCCGGTGCACTTACCTGCCGGAGTGGCCGTGCTTGCTAG | 1350 | 48.44 | MAMTMAESGGWIRLFLLVVFMLFIGAIARVPKEIPEIHNGAAEKLQSSSNSSMAVRLNEVEAHGNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGQFYVVTDSGDDDPVNPRPGTLRYAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYFRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYAAPTNPFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAFFIPSGAGASASYARASSLGAKPSSMVGSITSNAGALTCRSGRAC | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2470045 | 2475257 | + | Sed0018537.1 | Sed12g0409 | 731365 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0409 | 449 | SUPERFAMILY | Pectin lyase-like | 77 | 444 | IPR011050 | - | |
Sed12g0409 | 449 | PANTHER | PECTATE LYASE 18-RELATED | 24 | 446 | IPR045032 | GO:0030570(InterPro) | |
Sed12g0409 | 449 | FunFam | Pectate lyase | 100 | 442 | - | - | |
Sed12g0409 | 449 | SMART | amb_all | 175 | 372 | IPR002022 | - | |
Sed12g0409 | 449 | Gene3D | - | 100 | 442 | IPR012334 | - | |
Sed12g0409 | 449 | Pfam | Pectate lyase | 186 | 364 | IPR002022 | - | |
Sed12g0409 | 449 | PRINTS | Pollen allergen Amb family signature | 391 | 415 | IPR018082 | - | |
Sed12g0409 | 449 | PRINTS | Pollen allergen Amb family signature | 123 | 140 | IPR018082 | - | |
Sed12g0409 | 449 | PRINTS | Pollen allergen Amb family signature | 349 | 368 | IPR018082 | - | |
Sed12g0409 | 449 | PRINTS | Pollen allergen Amb family signature | 247 | 268 | IPR018082 | - | |
Sed12g0409 | 449 | PRINTS | Pollen allergen Amb family signature | 420 | 443 | IPR018082 | - | |
Sed12g0409 | 449 | PRINTS | Pollen allergen Amb family signature | 147 | 172 | IPR018082 | - | |
Sed12g0409 | 449 | PRINTS | Pollen allergen Amb family signature | 183 | 199 | IPR018082 | - | |
Sed12g0409 | 449 | PRINTS | Pollen allergen Amb family signature | 327 | 346 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1469 | Sed-Chr2:50689600 | Sed12g0409 | Sed-Chr12:2470045 | 2.30E-209 | dispersed | |
Sed02g1470 | Sed-Chr2:50689600 | Sed12g0409 | Sed-Chr12:2470045 | 1.10E-209 | dispersed | |
Sed05g0178 | Sed-Chr5:1087714 | Sed12g0409 | Sed-Chr12:2470045 | 1.10E-190 | dispersed | |
Sed09g0193 | Sed-Chr9:1553900 | Sed12g0409 | Sed-Chr12:2470045 | 2.10E-203 | dispersed | |
Sed11g0767 | Sed-Chr11:14088755 | Sed12g0409 | Sed-Chr12:2470045 | 4.40E-132 | dispersed | |
Sed11g0768 | Sed-Chr11:14150566 | Sed12g0409 | Sed-Chr12:2470045 | 1.70E-95 | dispersed | |
Sed11g1880 | Sed-Chr11:33382568 | Sed12g0409 | Sed-Chr12:2470045 | 1.80E-161 | dispersed | |
Sed12g0409 | Sed-Chr12:2470045 | Sed14g0373 | Sed-Chr14:3871953 | 1.30E-149 | dispersed | |
Sed12g0409 | Sed-Chr12:2470045 | Sed12g0410 | Sed-Chr12:2470045 | 5.60E-212 | tandem | |
Sed01g1572 | Sed-Chr1:11423477 | Sed12g0409 | Sed-Chr12:2470045 | 8.50E-167 | transposed | |
Sed01g4237 | Sed-Chr1:70681923 | Sed12g0409 | Sed-Chr12:2470045 | 7.00E-196 | wgd | |
Sed12g0409 | Sed-Chr12:2470045 | Sed02g1468 | Sed-Chr2:50689600 | 1.10E-231 | wgd | |
Sed12g0409 | Sed-Chr12:2470045 | Sed04g2044 | Sed-Chr4:34840872 | 6.40E-208 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0409 | K01728 | - | csv:101218188 | 852.432 |