Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0410 ATGGTTGACATGAGTATCCGCAATGCAACTGCTAGGAGGGAGCTTGGTTTCTTCTCGTGTGGAACCGGTAATCCAATCGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGTAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGCGGTCGTGACGGTCAATTCTACGTCGTAACCGATTCTGGCGATGACGACCCTGTCAACCCAAGGCCAGGCACGCTGCGTTATGCCGTCATTCAGGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCATCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTTAGGAGCTCACCCAGCCACTACGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTCGGGTCGAGTCACATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCTCCAACAATTACTTCACCCACCACAATGAGGTAATGCTATTGGGGCACAGTGATTCTTACTTTAGAGATAAACAAATGCAAGTGACTATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTCGACACGGATACTTCCACGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAGATCCAACCATCAATAGCCAGGGTAACAGATATGCCGCTCCAACCAACCCTTTCGCAAAAGAGGTAACCAAGAGGGTTGAGACAGCTGAGTCCCAGTGGAAAGGCTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCATTCCATCTGGTGCAGGGGCCTCAGCTAGCTATGCCAGAGCCTCGAGTTTGGGAGCTAAACCTTCATCCATGGTTGGTTCCATAACATCGAACGCCGGTGCACTTACCTGCCGGAGTGGCCGTGCTTGCTAG 1119 48.79 MVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGQFYVVTDSGDDDPVNPRPGTLRYAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYFRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYAAPTNPFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAFFIPSGAGASASYARASSLGAKPSSMVGSITSNAGALTCRSGRAC 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2470045 2475257 + Sed0018537.2 Sed12g0410 731366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0410 372 PRINTS Pollen allergen Amb family signature 272 291 IPR018082 -
Sed12g0410 372 PRINTS Pollen allergen Amb family signature 46 63 IPR018082 -
Sed12g0410 372 PRINTS Pollen allergen Amb family signature 106 122 IPR018082 -
Sed12g0410 372 PRINTS Pollen allergen Amb family signature 70 95 IPR018082 -
Sed12g0410 372 PRINTS Pollen allergen Amb family signature 314 338 IPR018082 -
Sed12g0410 372 PRINTS Pollen allergen Amb family signature 343 366 IPR018082 -
Sed12g0410 372 PRINTS Pollen allergen Amb family signature 170 191 IPR018082 -
Sed12g0410 372 PRINTS Pollen allergen Amb family signature 250 269 IPR018082 -
Sed12g0410 372 SMART amb_all 98 295 IPR002022 -
Sed12g0410 372 FunFam Pectate lyase 23 365 - -
Sed12g0410 372 SUPERFAMILY Pectin lyase-like 2 367 IPR011050 -
Sed12g0410 372 Gene3D - 23 365 IPR012334 -
Sed12g0410 372 PANTHER PECTATE LYASE 18-RELATED 15 369 IPR045032 GO:0030570(InterPro)
Sed12g0410 372 Pfam Pectate lyase 109 287 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2044 Sed-Chr4:34840872 Sed12g0410 Sed-Chr12:2470045 3.90E-189 dispersed
Sed12g0410 Sed-Chr12:2470045 Sed14g0373 Sed-Chr14:3871953 3.20E-149 dispersed
Sed12g0409 Sed-Chr12:2470045 Sed12g0410 Sed-Chr12:2470045 5.60E-212 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0410 K01728 - csv:101218188 737.258