Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0410 | ATGGTTGACATGAGTATCCGCAATGCAACTGCTAGGAGGGAGCTTGGTTTCTTCTCGTGTGGAACCGGTAATCCAATCGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAGAACCGTAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGAAATGCCATCGGCGGTCGTGACGGTCAATTCTACGTCGTAACCGATTCTGGCGATGACGACCCTGTCAACCCAAGGCCAGGCACGCTGCGTTATGCCGTCATTCAGGATGAACCTCTCTGGATTGTGTTCAAAAGAGACATGGTGATACAGCTGAAACAGGAGCTGATCATGAACAGTTTCAAGACAATTGATGCTCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCATCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTTAGGAGCTCACCCAGCCACTACGGGTGGAGAACAATGGCTGATGGAGATGCCATTTCCATTTTCGGGTCGAGTCACATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGATCCACTGCAATTACAATCTCCAACAATTACTTCACCCACCACAATGAGGTAATGCTATTGGGGCACAGTGATTCTTACTTTAGAGATAAACAAATGCAAGTGACTATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTCGACACGGATACTTCCACGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAGATCCAACCATCAATAGCCAGGGTAACAGATATGCCGCTCCAACCAACCCTTTCGCAAAAGAGGTAACCAAGAGGGTTGAGACAGCTGAGTCCCAGTGGAAAGGCTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCATTCCATCTGGTGCAGGGGCCTCAGCTAGCTATGCCAGAGCCTCGAGTTTGGGAGCTAAACCTTCATCCATGGTTGGTTCCATAACATCGAACGCCGGTGCACTTACCTGCCGGAGTGGCCGTGCTTGCTAG | 1119 | 48.79 | MVDMSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGQFYVVTDSGDDDPVNPRPGTLRYAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYFRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYAAPTNPFAKEVTKRVETAESQWKGWNWRSEGDLLLNGAFFIPSGAGASASYARASSLGAKPSSMVGSITSNAGALTCRSGRAC | 372 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2470045 | 2475257 | + | Sed0018537.2 | Sed12g0410 | 731366 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0410 | 372 | PRINTS | Pollen allergen Amb family signature | 272 | 291 | IPR018082 | - | |
Sed12g0410 | 372 | PRINTS | Pollen allergen Amb family signature | 46 | 63 | IPR018082 | - | |
Sed12g0410 | 372 | PRINTS | Pollen allergen Amb family signature | 106 | 122 | IPR018082 | - | |
Sed12g0410 | 372 | PRINTS | Pollen allergen Amb family signature | 70 | 95 | IPR018082 | - | |
Sed12g0410 | 372 | PRINTS | Pollen allergen Amb family signature | 314 | 338 | IPR018082 | - | |
Sed12g0410 | 372 | PRINTS | Pollen allergen Amb family signature | 343 | 366 | IPR018082 | - | |
Sed12g0410 | 372 | PRINTS | Pollen allergen Amb family signature | 170 | 191 | IPR018082 | - | |
Sed12g0410 | 372 | PRINTS | Pollen allergen Amb family signature | 250 | 269 | IPR018082 | - | |
Sed12g0410 | 372 | SMART | amb_all | 98 | 295 | IPR002022 | - | |
Sed12g0410 | 372 | FunFam | Pectate lyase | 23 | 365 | - | - | |
Sed12g0410 | 372 | SUPERFAMILY | Pectin lyase-like | 2 | 367 | IPR011050 | - | |
Sed12g0410 | 372 | Gene3D | - | 23 | 365 | IPR012334 | - | |
Sed12g0410 | 372 | PANTHER | PECTATE LYASE 18-RELATED | 15 | 369 | IPR045032 | GO:0030570(InterPro) | |
Sed12g0410 | 372 | Pfam | Pectate lyase | 109 | 287 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2044 | Sed-Chr4:34840872 | Sed12g0410 | Sed-Chr12:2470045 | 3.90E-189 | dispersed | |
Sed12g0410 | Sed-Chr12:2470045 | Sed14g0373 | Sed-Chr14:3871953 | 3.20E-149 | dispersed | |
Sed12g0409 | Sed-Chr12:2470045 | Sed12g0410 | Sed-Chr12:2470045 | 5.60E-212 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0410 | K01728 | - | csv:101218188 | 737.258 |