Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed12g0428 | ATGGCTGGTCAATTACATCTAGTAGTTGGATCTCTTGTTTGGATTGCGGATCCTGAGGAATCCTGGATAGATGGGGAGGTAGTTGAAGTTAATGGTCAAAATATCAAAGTACGCTGTTCGACAGGAACTACTGTTGAGGCTGAATCACCAAATGTATACCCGAAGGATCCTGATTTTCCATCATGTGGTGTGGATGATATGACAAGACTAGCTTATTTACACGAGCCAGGACTTTTGGAAAATTTAAAATGTCGTTATGATGTCAATGAAATTTATACATATACTGGAAGTATACTAATAGCCGTAAATCCTTTTCGAAGACTTCCTCATTTATATGATAATCACATGATGCAACAATACAAAAGTGCATCTTTAGGTGAGCTGAGCCCGCATCCCTTTGCTATTGCGAATTCTGCTTATAGACAGATGGTTAATGAGAGTATCAGCCAGTCAATTTTAGTTAGCGGGGAAAGTGGAGCTGGTAAAACAGAGAGTACAAAGATGCTTATGCGCTATCTTGCCTATGTTGGAGGGAGAGCTGGAGGGAAGGCTGCAACGGGTGAACGTTCTGTGGAGCAGCAAGTTCTAGAGTCCAACCCTGTTCTAGAAGCATTTGGCAATGCAAAGACGCTTAGAAACAATAATTCAAGTCGGTTTGGTAAATTTGTGGAGATCCAATTTGATCAGACTTGGAGAATTTCTGGAGCTGCTATTAGAACTTATTTATTAGAACGTTCCCGTGTTTGCCAAGTGTCTGATCCGGAGAGGAATTATCATTGCTTTTATATGCTTTGTGCTGCACCAACAGAGGAAATTGAAAAATATAAATTAGGAAATCCAAGAACATTTCATTATCTTAATCAATCTAATTGCTATGAACTTGACGGAGTGGATGATTCCAAGGAATATCTTTCTACTAGAAAAGCTATGGACGTTGTTGGAATAAGTACAACCGAGCAGGAAGCTATATTTCGAGTAGTAGCTGCAGTACTTCATTTGGGCAATGTTGAATTTGCAAAGGGGAAGGATGGGGATTCCTCTGAACCTAAGGATGAAAAATCTCGGTTCCATCTCAAAATGACAGCAGAACTATTGATGTGTGATGAGAAAGCTCTTGAAGATTCAATGTGTAGTCGTGTGATAGTTACACGTGATGAAACCATAACTAAAAGTCTCGATCCAGACTCTGCAACTTTGAGTAGGGACGCTTTAGCAAAAACTATTTATTCAAGATTATTTGACTGGATCGTTGATAAGCTTAATAATTCTATTGGCCAAGATCCTCATTCAAAGAACTTAATTGGGGTTTTGGATATCTATGGATTTGAGAGTTTCAAGACAAACAGCTTTGAGCAATTCTGTATTAACCTGACAAATGAGAAATTGCAGCAGCATTTCAACCAGCACGTGTTCAAGATGGAGCAAGAAGAATATACAAAAGAAGCAATTAACTGGAGTTATATTGAATTTATTGATAATCAAGATGTTCTTGATCTCATTGAGAAGAAACCTGGTGGTGTCATTGCTCTTTTGGATGAGGCTTGCATGTTTCCGAGGTCCACAAATGATACTTTTGCACAGAAACTATATCAAACTTTTAAGGACCATAAGCGCTTTAGCAAGCCTAAATTGTCACGAACTGACTTCACAATTTGTCATTATGCTGGTGACGTTACTTACCAAACAGAACTCTTCTTGGACAAAAACAAAGATTATGTTGTTGCGGAGCATCAAGCTGTGTTGAGTGCTTCTAAGTGCTCCTTTGTTTCAGGGCTCTTCCCCCTCATAGCTGAAGAAACCTCCAAATCATCCAAGTTCTCATCAATAGGAACTAGATTTAAGCAACAACTTCAATCCTTGCTTGAGACACTAAATGCTACTGAGCCACACTACATACGCTGTGTAAAGCCAAACAATCTTCTTAAACCAGCCATCTTTGAGAATACTAATGTTTTACAGCAGCTCCGATGTGGAGGAGTCATGGAAGCAATCAGGATCAGTTGTGCTGGATATCCCACTAGGAAGACGTTTGATGAATTTATTAGTCGGTTTACTATCTTGGCACCTAATGTTTTGAAGGGGAGCTCTGATGAGGTCACTGCATGTAAGAGGCTTTTGGAGAAAGTTAACCTTAAAGGGTATCAGATTGGTAAAACTAAAGTGTTTCTCAGGGCTGGTCAAATGGCAGAATTAGATGCCTTCCGAACTGAGGTCTTGGGAAGATCTGCTACTATTATCCAGAGGAAAGTTCGCTCATATTTGGGACGCAAACACTTTATTTTGTTGCGGTTGGCTGCCATACAAATTCAATCCATGTGTAGAGGGCAAATTGCACGCCAACAATATGAAAACATCAAAATGGAAGCTGCTTCTATCAAAATCCAAAAGTATTGGCGCATGTACTTTGCCCGCAGTTGCTATAAAAGATTGTGCTCTTCAGCTGTCGCTATTCAAGTTAGTATCCACGGTATGATTGCTCGTAAAGAGCTTAAGTTCAGGAGGCAGACAAGAGCTGCAATCATCATTCAGAGTCGATGTCGGCAATACTTGGCTCATTTGCATTATTTGAGGCTTAGAAAAGCTGCAATTACCACTCAATGTGCTTGGAGAGGAAGAGTTGCTCGTAAAGAACTTCGAAAGCTTAAAATGGCTGCTAAGGAAACTGGCGCTCTCCAAGCTGCCAAAAATATGCTGGAGAAGCAAGTGGAAGAACTAACTTGGAGATTGCAGCTAGAGAAAAGAATGCGGGCTGACATGGAGGAAGCCAAGACTCAAGAAAACAAAAAATTGAAGTCTCATTTAGAAGAATTGCAAACTCAATTTCAGGAAACAAAAGTACTTCTTATTGAGGAACGTGAAGCTGCAAAGAAAGTAGTTGAGCAAGTCTCAGTCATACAGGAGGTTCCCATTGTTGATCACGAGCTTATCAATAAGCTAACTACTGAAAATGAAGAACTTAAGGCTTTTGTAAGTTCTTTGGAAGACAAAATTGATGAAACAGAAAAAAAATTTGAGGAATGTAACAGACTTAGTGAAGAGCGGCTGAAGCAGGCTACCGATGCTGAGTCAAAGATAATAGAATTAAAGACTTCCATGCAAAGGCTTGAGGAAAAGCTATCTGACTTGGAAGCTGAAGACCAAATTCTAAGGCAGAAAGCATTGCTAAAGCCTCCTTCAAGAAAAATGTCTGGACGTATAACAACTCAGCCTTCGGAAAATGGTCACCCTGAAATGCTAACCAGTGCGTCATCAAAAAAATTTGGAACCGATGCCGATGAAAAATTGAGGAGATCCCAAATTGAAAGGCAGAACGAAGGCATGGATGTTCTATCAAAATACCTCACAAGGGATCTTGGGTACAGTGAGGGAAAACCTGTGGCTGCTTTTGTAATTTATAAATCTTTTCTCCATTGGAGATCATTTGAAGCAGAAAAAACAAGTGTTTTTGATCGGCTTATTCAGATTATTGGTTATGCAATTGAGAATCAGGATGATAATGAACATATGGCTTATTGGTTATCCAACACAACTACATTGTTGTTCCTTCTTCAGAAGAGTTTAAAAACTACTCCACAAAAGCCTCCCACCCCATCATTGTTTGAGCGAATGGCCCAAGGTCTTCGTTTATCTTCTGCTAGCCTTTCAGTTGGCACCCTTGATGTGGTACGGCAAGTTGAGGCCAAATATCCTGCTCTACTTTTCAAGCAGCAGCTAACAGCCTATGTAGAAAAGATATATGGAATAGTAAGGGACAACCTAAAGAAGAAATTATCACCGTTGCTTTCAACTTGTATCCAGGCTCCCAGATGTCCGAGAGGAAATATGTTTAAATCATCTGGCCAAGCAAATAGTAGTATCCCTCCCAGTAGTTCATGGAGCAGCATCATCATCAATCACTTTAATGATCAGCTTTGGATATTGCAGAAGAACTTCGTGCCTACCTTTTTGGTCCGGAGGATATTCAGTCAGGTTTTTTCACACATCAACGTACAGCTTTTCAATAGTCTTCTACTTCGTCGAGAGTGCTGCACGTTTAGCAATGGAGAATATGTAAAGTCAGGACTGGCTGAGTTAGAGATCTGGAGTTGCCAAGCAAAAGAAGAGTATGCTGGGTCGTCTTGGGATGAGCTAAAACCGGTGAGGCAAGCTGTTGGATTCTTGGTTATTCACCAGAAGTCTAAAATATCTTATGCTGAAATAACAAAAGAGCTCTGTCCAATATTGAACGTTCAGCAGCTTTATAGAATATGTACTCTTTATTGCGATGATAATTACCATACTAAGAGCGTAGATCAAGATGTTATATCTAGTATGAAGGCTGCAATGACCGAAGATTCAAATGATGAAGACAGTAATTCCTTTTTGTTAGAAGACGATTCCAGTATACCTTTCTCAGTTGACGACATATCCGATTCCCTACGAGAAACGAATTTTCAAGATTTAAAGCCACCAGCAGAACTACTTGAGAATCCGGCCTTCAGTTTTTTACAGGTTTAA | 4497 | 39.87 | MAGQLHLVVGSLVWIADPEESWIDGEVVEVNGQNIKVRCSTGTTVEAESPNVYPKDPDFPSCGVDDMTRLAYLHEPGLLENLKCRYDVNEIYTYTGSILIAVNPFRRLPHLYDNHMMQQYKSASLGELSPHPFAIANSAYRQMVNESISQSILVSGESGAGKTESTKMLMRYLAYVGGRAGGKAATGERSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVEIQFDQTWRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPTEEIEKYKLGNPRTFHYLNQSNCYELDGVDDSKEYLSTRKAMDVVGISTTEQEAIFRVVAAVLHLGNVEFAKGKDGDSSEPKDEKSRFHLKMTAELLMCDEKALEDSMCSRVIVTRDETITKSLDPDSATLSRDALAKTIYSRLFDWIVDKLNNSIGQDPHSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEAINWSYIEFIDNQDVLDLIEKKPGGVIALLDEACMFPRSTNDTFAQKLYQTFKDHKRFSKPKLSRTDFTICHYAGDVTYQTELFLDKNKDYVVAEHQAVLSASKCSFVSGLFPLIAEETSKSSKFSSIGTRFKQQLQSLLETLNATEPHYIRCVKPNNLLKPAIFENTNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFISRFTILAPNVLKGSSDEVTACKRLLEKVNLKGYQIGKTKVFLRAGQMAELDAFRTEVLGRSATIIQRKVRSYLGRKHFILLRLAAIQIQSMCRGQIARQQYENIKMEAASIKIQKYWRMYFARSCYKRLCSSAVAIQVSIHGMIARKELKFRRQTRAAIIIQSRCRQYLAHLHYLRLRKAAITTQCAWRGRVARKELRKLKMAAKETGALQAAKNMLEKQVEELTWRLQLEKRMRADMEEAKTQENKKLKSHLEELQTQFQETKVLLIEEREAAKKVVEQVSVIQEVPIVDHELINKLTTENEELKAFVSSLEDKIDETEKKFEECNRLSEERLKQATDAESKIIELKTSMQRLEEKLSDLEAEDQILRQKALLKPPSRKMSGRITTQPSENGHPEMLTSASSKKFGTDADEKLRRSQIERQNEGMDVLSKYLTRDLGYSEGKPVAAFVIYKSFLHWRSFEAEKTSVFDRLIQIIGYAIENQDDNEHMAYWLSNTTTLLFLLQKSLKTTPQKPPTPSLFERMAQGLRLSSASLSVGTLDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNLKKKLSPLLSTCIQAPRCPRGNMFKSSGQANSSIPPSSSWSSIIINHFNDQLWILQKNFVPTFLVRRIFSQVFSHINVQLFNSLLLRRECCTFSNGEYVKSGLAELEIWSCQAKEEYAGSSWDELKPVRQAVGFLVIHQKSKISYAEITKELCPILNVQQLYRICTLYCDDNYHTKSVDQDVISSMKAAMTEDSNDEDSNSFLLEDDSSIPFSVDDISDSLRETNFQDLKPPAELLENPAFSFLQV | 1498 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2572455 | 2595119 | - | Sed0010619.1 | Sed12g0428 | 731384 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed12g0428 | 1498 | ProSiteProfiles | IQ motif profile. | 812 | 839 | - | - | |
| Sed12g0428 | 1498 | FunFam | unconventional myosin-Va | 837 | 885 | - | - | |
| Sed12g0428 | 1498 | ProSiteProfiles | Dilute domain profile. | 1150 | 1444 | IPR002710 | - | |
| Sed12g0428 | 1498 | FunFam | Myosin 2 | 316 | 433 | - | - | |
| Sed12g0428 | 1498 | FunFam | Class V myosin | 443 | 590 | - | - | |
| Sed12g0428 | 1498 | MobiDBLite | consensus disorder prediction | 1062 | 1086 | - | - | |
| Sed12g0428 | 1498 | PRINTS | Myosin heavy chain signature | 486 | 514 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed12g0428 | 1498 | PRINTS | Myosin heavy chain signature | 433 | 461 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed12g0428 | 1498 | PRINTS | Myosin heavy chain signature | 92 | 111 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed12g0428 | 1498 | PRINTS | Myosin heavy chain signature | 200 | 227 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed12g0428 | 1498 | PRINTS | Myosin heavy chain signature | 149 | 174 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed12g0428 | 1498 | ProSiteProfiles | IQ motif profile. | 835 | 864 | - | - | |
| Sed12g0428 | 1498 | FunFam | Myosin heavy chain | 256 | 311 | - | - | |
| Sed12g0428 | 1498 | PANTHER | MYOSIN | 835 | 1443 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Sed12g0428 | 1498 | CDD | MYSc_Myo11 | 76 | 724 | IPR036018 | - | |
| Sed12g0428 | 1498 | ProSiteProfiles | Myosin motor domain profile. | 62 | 736 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed12g0428 | 1498 | Gene3D | - | 670 | 737 | - | - | |
| Sed12g0428 | 1498 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 316 | 605 | - | - | |
| Sed12g0428 | 1498 | ProSiteProfiles | IQ motif profile. | 762 | 791 | - | - | |
| Sed12g0428 | 1498 | Pfam | Myosin head (motor domain) | 64 | 724 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed12g0428 | 1498 | MobiDBLite | consensus disorder prediction | 1059 | 1093 | - | - | |
| Sed12g0428 | 1498 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 8 | 57 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed12g0428 | 1498 | Pfam | DIL domain | 1320 | 1423 | IPR002710 | - | |
| Sed12g0428 | 1498 | Gene3D | - | 443 | 627 | - | - | |
| Sed12g0428 | 1498 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 831 | 887 | IPR027417 | - | |
| Sed12g0428 | 1498 | FunFam | Myosin XI D | 739 | 788 | - | - | |
| Sed12g0428 | 1498 | Coils | Coil | 976 | 1010 | - | - | |
| Sed12g0428 | 1498 | CDD | MyosinXI_CBD | 1101 | 1467 | IPR037975 | GO:0007015(InterPro) | |
| Sed12g0428 | 1498 | Gene3D | Kinesin motor domain | 65 | 666 | IPR036961 | - | |
| Sed12g0428 | 1498 | SMART | iq_5 | 857 | 879 | IPR000048 | GO:0005515(InterPro) | |
| Sed12g0428 | 1498 | SMART | iq_5 | 786 | 808 | IPR000048 | GO:0005515(InterPro) | |
| Sed12g0428 | 1498 | SMART | iq_5 | 738 | 760 | IPR000048 | GO:0005515(InterPro) | |
| Sed12g0428 | 1498 | SMART | iq_5 | 834 | 856 | IPR000048 | GO:0005515(InterPro) | |
| Sed12g0428 | 1498 | SMART | iq_5 | 809 | 831 | IPR000048 | GO:0005515(InterPro) | |
| Sed12g0428 | 1498 | SMART | iq_5 | 761 | 783 | IPR000048 | GO:0005515(InterPro) | |
| Sed12g0428 | 1498 | Pfam | Myosin N-terminal SH3-like domain | 9 | 46 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed12g0428 | 1498 | Coils | Coil | 895 | 954 | - | - | |
| Sed12g0428 | 1498 | ProSiteProfiles | IQ motif profile. | 858 | 887 | - | - | |
| Sed12g0428 | 1498 | SMART | DIL_2 | 1319 | 1426 | IPR002710 | - | |
| Sed12g0428 | 1498 | ProSiteProfiles | IQ motif profile. | 787 | 816 | - | - | |
| Sed12g0428 | 1498 | Pfam | IQ calmodulin-binding motif | 836 | 855 | IPR000048 | GO:0005515(InterPro) | |
| Sed12g0428 | 1498 | Pfam | IQ calmodulin-binding motif | 789 | 808 | IPR000048 | GO:0005515(InterPro) | |
| Sed12g0428 | 1498 | Pfam | IQ calmodulin-binding motif | 765 | 782 | IPR000048 | GO:0005515(InterPro) | |
| Sed12g0428 | 1498 | Pfam | IQ calmodulin-binding motif | 859 | 879 | IPR000048 | GO:0005515(InterPro) | |
| Sed12g0428 | 1498 | Pfam | IQ calmodulin-binding motif | 741 | 759 | IPR000048 | GO:0005515(InterPro) | |
| Sed12g0428 | 1498 | Gene3D | - | 739 | 787 | - | - | |
| Sed12g0428 | 1498 | Gene3D | - | 788 | 837 | - | - | |
| Sed12g0428 | 1498 | Gene3D | - | 838 | 886 | - | - | |
| Sed12g0428 | 1498 | SMART | MYSc_2a | 56 | 737 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Sed12g0428 | 1498 | Coils | Coil | 1018 | 1052 | - | - | |
| Sed12g0428 | 1498 | Gene3D | - | 256 | 314 | - | - | |
| Sed12g0428 | 1498 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 34 | 791 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed07g0182 | Sed-Chr7:1561268 | Sed12g0428 | Sed-Chr12:2572455 | 0.00E+00 | dispersed | |
| Sed09g0829 | Sed-Chr9:25453915 | Sed12g0428 | Sed-Chr12:2572455 | 0.00E+00 | dispersed | |
| Sed11g0201 | Sed-Chr11:1805906 | Sed12g0428 | Sed-Chr12:2572455 | 0.00E+00 | dispersed | |
| Sed12g0428 | Sed-Chr12:2572455 | Sed12g0429 | Sed-Chr12:2573912 | 0.00E+00 | tandem | |
| Sed12g0428 | Sed-Chr12:2572455 | Sed02g1451 | Sed-Chr2:50564742 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed12g0428 | K10357 | - | csv:101221506 | 2593.15 |