Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0429 ATGGCTGGTCAATTACATCTAGTAGTTGGATCTCTTGTTTGGATTGCGGATCCTGAGGAATCCTGGATAGATGGGGAGGTAGTTGAAGTTAATGGTCAAAATATCAAAGTACGCTGTTCGACAGGAACTACTGTTGAGGCTGAATCACCAAATGTATACCCGAAGGATCCTGATTTTCCATCATGTGGTGTGGATGATATGACAAGACTAGCTTATTTACACGAGCCAGGACTTTTGGAAAATTTAAAATGTCGTTATGATGTCAATGAAATTTATACATATACTGGAAGTATACTAATAGCCGTAAATCCTTTTCGAAGACTTCCTCATTTATATGATAATCACATGATGCAACAATACAAAAGTGCATCTTTAGGTGAGCTGAGCCCGCATCCCTTTGCTATTGCGAATTCTGCTTATAGACAGATGGTTAATGAGAGTATCAGCCAGTCAATTTTAGTTAGCGGGGAAAGTGGAGCTGGTAAAACAGAGAGTACAAAGATGCTTATGCGCTATCTTGCCTATGTTGGAGGGAGAGCTGGAGGGAAGGCTGCAACGGGTGAACGTTCTGTGGAGCAGCAAGTTCTAGAGTCCAACCCTGTTCTAGAAGCATTTGGCAATGCAAAGACGCTTAGAAACAATAATTCAAGTCGGTTTGGTAAATTTGTGGAGATCCAATTTGATCAGACTTGGAGAATTTCTGGAGCTGCTATTAGAACTTATTTATTAGAACGTTCCCGTGTTTGCCAAGTGTCTGATCCGGAGAGGAATTATCATTGCTTTTATATGCTTTGTGCTGCACCAACAGAGGAAATTGAAAAATATAAATTAGGAAATCCAAGAACATTTCATTATCTTAATCAATCTAATTGCTATGAACTTGACGGAGTGGATGATTCCAAGGAATATCTTTCTACTAGAAAAGCTATGGACGTTGTTGGAATAAGTACAACCGAGCAGGAAGCTATATTTCGAGTAGTAGCTGCAGTACTTCATTTGGGCAATGTTGAATTTGCAAAGGGGAAGGATGGGGATTCCTCTGAACCTAAGGATGAAAAATCTCGGTTCCATCTCAAAATGACAGCAGAACTATTGATGTGTGATGAGAAAGCTCTTGAAGATTCAATGTGTAGTCGTGTGATAGTTACACGTGATGAAACCATAACTAAAAGTCTCGATCCAGACTCTGCAACTTTGAGTAGGGACGCTTTAGCAAAAACTATTTATTCAAGATTATTTGACTGGATCGTTGATAAGCTTAATAATTCTATTGGCCAAGATCCTCATTCAAAGAACTTAATTGGGGTTTTGGATATCTATGGATTTGAGAGTTTCAAGACAAACAGCTTTGAGCAATTCTGTATTAACCTGACAAATGAGAAATTGCAGCAGCATTTCAACCAGCACGTGTTCAAGATGGAGCAAGAAGAATATACAAAAGAAGCAATTAACTGGAGTTATATTGAATTTATTGATAATCAAGATGTTCTTGATCTCATTGAGAAGAAACCTGGTGGTGTCATTGCTCTTTTGGATGAGGCTTGCATGTTTCCGAGGTCCACAAATGATACTTTTGCACAGAAACTATATCAAACTTTTAAGGACCATAAGCGCTTTAGCAAGCCTAAATTGTCACGAACTGACTTCACAATTTGTCATTATGCTGGTGACGTTACTTACCAAACAGAACTCTTCTTGGACAAAAACAAAGATTATGTTGTTGCGGAGCATCAAGCTGTGTTGAGTGCTTCTAAGTGCTCCTTTGTTTCAGGGCTCTTCCCCCTCATAGCTGAAGAAACCTCCAAATCATCCAAGTTCTCATCAATAGGAACTAGATTTAAGCAACAACTTCAATCCTTGCTTGAGACACTAAATGCTACTGAGCCACACTACATACGCTGTGTAAAGCCAAACAATCTTCTTAAACCAGCCATCTTTGAGAATACTAATGTTTTACAGCAGCTCCGATGTGGAGGAGTCATGGAAGCAATCAGGATCAGTTGTGCTGGATATCCCACTAGGAAGACGTTTGATGAATTTATTAGTCGGTTTACTATCTTGGCACCTAATGTTTTGAAGGGGAGCTCTGATGAGGTCACTGCATGTAAGAGGCTTTTGGAGAAAGTTAACCTTAAAGGGTATCAGATTGGTAAAACTAAAGTGTTTCTCAGGGCTGGTCAAATGGCAGAATTAGATGCCTTCCGAACTGAGGTCTTGGGAAGATCTGCTACTATTATCCAGAGGAAAGTTCGCTCATATTTGGGACGCAAACACTTTATTTTGTTGCGGTTGGCTGCCATACAAATTCAATCCATGTGTAGAGGGCAAATTGCACGCCAACAATATGAAAACATCAAAATGGAAGCTGCTTCTATCAAAATCCAAAAGTATTGGCGCATGTACTTTGCCCGCAGTTGCTATAAAAGATTGTGCTCTTCAGCTGTCGCTATTCAAGTTAGTATCCACGGTATGATTGCTCGTAAAGAGCTTAAGTTCAGGAGGCAGACAAGAGCTGCAATCATCATTCAGAGTCGATGTCGGCAATACTTGGCTCATTTGCATTATTTGAGGCTTAGAAAAGCTGCAATTACCACTCAATGTGCTTGGAGAGGAAGAGTTGCTCGTAAAGAACTTCGAAAGCTTAAAATGGCTGCTAAGGAAACTGGCGCTCTCCAAGCTGCCAAAAATATGCTGGAGAAGCAAGTGGAAGAACTAACTTGGAGATTGCAGCTAGAGAAAAGAATGCGGGCTGACATGGAGGAAGCCAAGACTCAAGAAAACAAAAAATTGAAGTCTCATTTAGAAGAATTGCAAACTCAATTTCAGGAAACAAAAGTACTTCTTATTGAGGAACGTGAAGCTGCAAAGAAAGTAGTTGAGCAAGTCTCAGTCATACAGGAGGTTCCCATTGTTGATCACGAGCTTATCAATAAGCTAACTACTGAAAATGAAGAACTTAAGGCTTTTGTAAGTTCTTTGGAAGACAAAATTGATGAAACAGAAAAAAAATTTGAGGAATGTAACAGACTTAGTGAAGAGCGGCTGAAGCAGGCTACCGATGCTGAGTCAAAGATAATAGAATTAAAGACTTCCATGCAAAGGCTTGAGGAAAAGCTATCTGACTTGGAAGCTGAAGACCAAATTCTAAGGCAGAAAGCATTGCTAAAGCCTCCTTCAAGAAAAATGTCTGGACGTATAACAACTCAGCCTTCGGAAAATGGTCACCCTGAAATGCTAACCAGTGCGTCATCAAAAAAATTTGGAACCGATGCCGATGAAAAATTGAGGAGATCCCAAATTGAAAGGCAGAACGAAGGCATGGATGTTCTATCAAAATACCTCACAAGGGATCTTGGGTACAGTGAGGGAAAACCTGTGGCTGCTTTTGTAATTTATAAATCTTTTCTCCATTGGAGATCATTTGAAGCAGAAAAAACAAGTGTTTTTGATCGGCTTATTCAGATTATTGGTTATGCAATTGAGAATCAGGATGATAATGAACATATGGCTTATTGGTTATCCAACACAACTACATTGTTGTTCCTTCTTCAGAAGAGTTTAAAAACTACTCCACAAAAGCCTCCCACCCCATCATTGTTTGAGCGAATGGCCCAAGGTCTTCGTTTATCTTCTGCTAGCCTTTCAGTTGGCACCCTTGATGTGGTACGGCAAGTTGAGGCCAAATATCCTGCTCTACTTTTCAAGCAGCAGCTAACAGCCTATGTAGAAAAGATATATGGAATAGTAAGGGACAACCTAAAGAAGAAATTATCACCGTTGCTTTCAACTTGTATCCAGGCTCCCAGATGTCCGAGAGGAAATATGTTTAAATCATCTGGCCAAGCAAATAGTAGTATCCCTCCCAGTAGTTCATGGAGCAGCATCATCATCAATCACTTTAATGATCAGCTTTGGATATTGCAGAAGAACTTCGTGCCTACCTTTTTGGTCCGGAGGATATTCAGTCAGGTTTTTTCACACATCAACGTACAGCTTTTCAATAGTCTTCTACTTCGTCGAGAGTGCTGCACGTTTAGCAATGGAGAATATGTAAAGTCAGGACTGGCTGAGTTAGAGATCTGGAGTTGCCAAGCAAAAGAAGAGTATGCTGGGTCGTCTTGGGATGAGCTAAAACCGGTGAGGCAAGCTGTTGGATTCTTGGTATGTTCTTTCACTGTTCTATGTACTCCCAGAGGCCACCATTCTGAATTTCTATATGTGCCATACATATTGTGA 4236 40.18 MAGQLHLVVGSLVWIADPEESWIDGEVVEVNGQNIKVRCSTGTTVEAESPNVYPKDPDFPSCGVDDMTRLAYLHEPGLLENLKCRYDVNEIYTYTGSILIAVNPFRRLPHLYDNHMMQQYKSASLGELSPHPFAIANSAYRQMVNESISQSILVSGESGAGKTESTKMLMRYLAYVGGRAGGKAATGERSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVEIQFDQTWRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPTEEIEKYKLGNPRTFHYLNQSNCYELDGVDDSKEYLSTRKAMDVVGISTTEQEAIFRVVAAVLHLGNVEFAKGKDGDSSEPKDEKSRFHLKMTAELLMCDEKALEDSMCSRVIVTRDETITKSLDPDSATLSRDALAKTIYSRLFDWIVDKLNNSIGQDPHSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEAINWSYIEFIDNQDVLDLIEKKPGGVIALLDEACMFPRSTNDTFAQKLYQTFKDHKRFSKPKLSRTDFTICHYAGDVTYQTELFLDKNKDYVVAEHQAVLSASKCSFVSGLFPLIAEETSKSSKFSSIGTRFKQQLQSLLETLNATEPHYIRCVKPNNLLKPAIFENTNVLQQLRCGGVMEAIRISCAGYPTRKTFDEFISRFTILAPNVLKGSSDEVTACKRLLEKVNLKGYQIGKTKVFLRAGQMAELDAFRTEVLGRSATIIQRKVRSYLGRKHFILLRLAAIQIQSMCRGQIARQQYENIKMEAASIKIQKYWRMYFARSCYKRLCSSAVAIQVSIHGMIARKELKFRRQTRAAIIIQSRCRQYLAHLHYLRLRKAAITTQCAWRGRVARKELRKLKMAAKETGALQAAKNMLEKQVEELTWRLQLEKRMRADMEEAKTQENKKLKSHLEELQTQFQETKVLLIEEREAAKKVVEQVSVIQEVPIVDHELINKLTTENEELKAFVSSLEDKIDETEKKFEECNRLSEERLKQATDAESKIIELKTSMQRLEEKLSDLEAEDQILRQKALLKPPSRKMSGRITTQPSENGHPEMLTSASSKKFGTDADEKLRRSQIERQNEGMDVLSKYLTRDLGYSEGKPVAAFVIYKSFLHWRSFEAEKTSVFDRLIQIIGYAIENQDDNEHMAYWLSNTTTLLFLLQKSLKTTPQKPPTPSLFERMAQGLRLSSASLSVGTLDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNLKKKLSPLLSTCIQAPRCPRGNMFKSSGQANSSIPPSSSWSSIIINHFNDQLWILQKNFVPTFLVRRIFSQVFSHINVQLFNSLLLRRECCTFSNGEYVKSGLAELEIWSCQAKEEYAGSSWDELKPVRQAVGFLVCSFTVLCTPRGHHSEFLYVPYIL 1411
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 2573912 2595119 - Sed0010619.2 Sed12g0429 731385
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0429 1411 ProSiteProfiles IQ motif profile. 812 839 - -
Sed12g0429 1411 FunFam Class V myosin 443 590 - -
Sed12g0429 1411 Gene3D - 443 627 - -
Sed12g0429 1411 Gene3D - 256 314 - -
Sed12g0429 1411 Gene3D - 670 737 - -
Sed12g0429 1411 MobiDBLite consensus disorder prediction 1062 1086 - -
Sed12g0429 1411 ProSiteProfiles IQ motif profile. 835 864 - -
Sed12g0429 1411 ProSiteProfiles Dilute domain profile. 1150 1411 IPR002710 -
Sed12g0429 1411 FunFam Myosin XI D 739 788 - -
Sed12g0429 1411 Gene3D - 838 886 - -
Sed12g0429 1411 Gene3D - 739 787 - -
Sed12g0429 1411 Gene3D - 788 837 - -
Sed12g0429 1411 FunFam Myosin 2 316 433 - -
Sed12g0429 1411 CDD MYSc_Myo11 76 724 IPR036018 -
Sed12g0429 1411 ProSiteProfiles Myosin motor domain profile. 62 736 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed12g0429 1411 FunFam unconventional myosin-Va 837 885 - -
Sed12g0429 1411 ProSiteProfiles IQ motif profile. 762 791 - -
Sed12g0429 1411 MobiDBLite consensus disorder prediction 1059 1093 - -
Sed12g0429 1411 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed12g0429 1411 Pfam Myosin head (motor domain) 64 724 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed12g0429 1411 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed12g0429 1411 PRINTS Myosin heavy chain signature 433 461 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed12g0429 1411 PRINTS Myosin heavy chain signature 486 514 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed12g0429 1411 PRINTS Myosin heavy chain signature 200 227 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed12g0429 1411 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed12g0429 1411 Pfam DIL domain 1320 1390 IPR002710 -
Sed12g0429 1411 Gene3D Myosin VI head, motor domain, U50 subdomain 316 605 - -
Sed12g0429 1411 Gene3D Kinesin motor domain 65 666 IPR036961 -
Sed12g0429 1411 Pfam IQ calmodulin-binding motif 741 759 IPR000048 GO:0005515(InterPro)
Sed12g0429 1411 Pfam IQ calmodulin-binding motif 859 879 IPR000048 GO:0005515(InterPro)
Sed12g0429 1411 Pfam IQ calmodulin-binding motif 836 855 IPR000048 GO:0005515(InterPro)
Sed12g0429 1411 Pfam IQ calmodulin-binding motif 765 782 IPR000048 GO:0005515(InterPro)
Sed12g0429 1411 Pfam IQ calmodulin-binding motif 789 808 IPR000048 GO:0005515(InterPro)
Sed12g0429 1411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 887 IPR027417 -
Sed12g0429 1411 PANTHER MYOSIN 13 835 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Sed12g0429 1411 Coils Coil 976 1010 - -
Sed12g0429 1411 SMART iq_5 857 879 IPR000048 GO:0005515(InterPro)
Sed12g0429 1411 SMART iq_5 786 808 IPR000048 GO:0005515(InterPro)
Sed12g0429 1411 SMART iq_5 738 760 IPR000048 GO:0005515(InterPro)
Sed12g0429 1411 SMART iq_5 834 856 IPR000048 GO:0005515(InterPro)
Sed12g0429 1411 SMART iq_5 809 831 IPR000048 GO:0005515(InterPro)
Sed12g0429 1411 SMART iq_5 761 783 IPR000048 GO:0005515(InterPro)
Sed12g0429 1411 FunFam Myosin heavy chain 256 311 - -
Sed12g0429 1411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 791 IPR027417 -
Sed12g0429 1411 Coils Coil 895 954 - -
Sed12g0429 1411 ProSiteProfiles IQ motif profile. 858 887 - -
Sed12g0429 1411 SMART DIL_2 1319 1410 IPR002710 -
Sed12g0429 1411 Pfam Myosin N-terminal SH3-like domain 9 46 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed12g0429 1411 ProSiteProfiles IQ motif profile. 787 816 - -
Sed12g0429 1411 SMART MYSc_2a 56 737 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Sed12g0429 1411 Coils Coil 1018 1052 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1451 Sed-Chr2:50564742 Sed12g0429 Sed-Chr12:2573912 0.00E+00 dispersed
Sed12g0428 Sed-Chr12:2572455 Sed12g0429 Sed-Chr12:2573912 0.00E+00 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0429 K10357 - csv:101221506 2419.42