Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0443 ATGAACTGCTCTATCTCCGGCGAGATTCCGGAAGAGCCGGTTGTCTCCAAGAACTCTGGATTACTCTTCGAGAAGCGTTTAATCGAGAGGCAAATTTCAGACGTTGGGAAGTGCCCTATAACAGGCGAACCCCTTTCCATGGATGACATCGTTCCAATTAAAATTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGACGTGTTGGTGCTGTCCAATTTTGCACTAGAGCAACAACTGCATACAGCCAGACAGGAGCTAAGTCATGCCTTGTATCAGCATGATGCTGCATGTCGTGTAATTGCAAGACTTAAAAAGGAACGGGATGAGGCTCGGTCATTACTTGCTCAGGCAGAGAGGCAGATGCCTTTGTCATCAACTTCAATTTCATCCAATGCTGGAGTGAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGACCTGATGGGAAGAAAATACGTCTGGGAATATCAGCCAGTGTTATCTCCGAGCTCACAGACTGTAATGCTGCTCTTTCACAACAAAGGAAGAAGCGGCAGATACCTCCTACGTTAGTTCCTATTGAGGCTGTAGAAAGTTACACTCAGATCTCTAGTCATCCACTACATAAAACAAACAAACCAGGGATTATATCTCTTGACATCCATCACGACAAGGATGTCATTGCGACTGGAGGGCAGGACACAAATGCTGTTGTTTTTGATCGATCATCTGGGGAAATTTTATCCACACTGAGTGGCCATTCCAAGAAGGTAACAAGTGTCAAATTTGTTGGCCGGGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTCCGTGTGTGGCAACAATCTGATGATGGGATCTACAATTGTAGGCACATTTTAAAGGATCACACAGCTGAGGTTCAAGCTGTCACCGTCCATGCTACCAATAACTTCTTTGTTACTGCCTCCCTTGATAACACATGGTGTTTTTATGATCTTGCTTCTGGATCATGCCTGGCCCAGGTTGCAGAGGCTTCAGCAACGGAGGGCTACACGTCGGCTGCCTTTCATCCTGATGGTCTCATCCTCGGAACAGGCACGTCAGAAGCCCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCAAGATTTGATGGACACGTTGGGGCAGTAACTGCTATATCTTTTTCTGAAAATGGTTACTTCCTTGCGACCGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAATTTTCGTACATTTGCACCTTATGATTCAGAAACTTCAACAAACTATGTGGAATTTGACCATAGTGGATCTTACCTTGCGGTTGCTGGCTCAGATATAAGAGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGTATCAAAACTATTCCAGATTTATCTGGCACAGGTAAAGCAACCTGCCTAAAGTATGGTCCAGATGCAAAATACTTGGCAGTTGGATCCATGGATCGAAATCTTCGTATTTTCGGTGTGCCTGGGGAAGACGACCCCACGGAGACATAA 1566 44.57 MNCSISGEIPEEPVVSKNSGLLFEKRLIERQISDVGKCPITGEPLSMDDIVPIKIGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSISSNAGVNVNGKRVNEDEELGPDGKKIRLGISASVISELTDCNAALSQQRKKRQIPPTLVPIEAVESYTQISSHPLHKTNKPGIISLDIHHDKDVIATGGQDTNAVVFDRSSGEILSTLSGHSKKVTSVKFVGRDDLFLTGSADKTVRVWQQSDDGIYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYDLASGSCLAQVAEASATEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETSTNYVEFDHSGSYLAVAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKYGPDAKYLAVGSMDRNLRIFGVPGEDDPTET 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2668625 2679557 - Sed0027455.1 Sed12g0443 731399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0443 521 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 511 IPR038959 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER)
Sed12g0443 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 291 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 345 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 SMART WD40_4 424 463 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 SMART WD40_4 297 336 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 SMART WD40_4 207 249 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 SMART WD40_4 252 291 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 SMART WD40_4 470 511 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 SMART WD40_4 383 421 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 SMART WD40_4 339 380 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 SMART Ubox_2 1 66 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed12g0443 521 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Sed12g0443 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 390 423 - -
Sed12g0443 521 SUPERFAMILY RING/U-box 1 53 - -
Sed12g0443 521 SUPERFAMILY WD40 repeat-like 219 510 IPR036322 GO:0005515(InterPro)
Sed12g0443 521 Coils Coil 113 133 - -
Sed12g0443 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 291 - -
Sed12g0443 521 CDD RING-Ubox_PRP19 1 54 - -
Sed12g0443 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 389 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 Pfam WD domain, G-beta repeat 254 290 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 Pfam WD domain, G-beta repeat 385 421 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 Pfam WD domain, G-beta repeat 473 510 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 Pfam WD domain, G-beta repeat 355 380 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 Pfam WD domain, G-beta repeat 299 336 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 CDD WD40 223 510 - -
Sed12g0443 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 390 430 IPR001680 GO:0005515(InterPro)
Sed12g0443 521 Pfam Prp19/Pso4-like 64 129 IPR013915 -
Sed12g0443 521 FunFam Pre-mRNA-processing factor 19, putative 1 58 - -
Sed12g0443 521 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed12g0443 521 FunFam pre-mRNA-processing factor 19 196 512 - -
Sed12g0443 521 Gene3D - 199 512 IPR015943 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0443 Sed-Chr12:2668625 Sed04g3550 Sed-Chr4:44911276 1.10E-09 dispersed
Sed12g0443 Sed-Chr12:2668625 Sed12g0444 Sed-Chr12:2668625 2.40E-275 tandem
Sed12g0443 Sed-Chr12:2668625 Sed02g1438 Sed-Chr2:50476532 1.30E-276 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0443 K10599 - csv:101204424 949.118