Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0444 ATGGATGACATCGTTCCAATTAAAATTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGACGTGTTGGTGCTGTCCAATTTTGCACTAGAGCAACAACTGCATACAGCCAGACAGGAGCTAAGTCATGCCTTGTATCAGCATGATGCTGCATGTCGTGTAATTGCAAGACTTAAAAAGGAACGGGATGAGGCTCGGTCATTACTTGCTCAGGCAGAGAGGCAGATGCCTTTGTCATCAACTTCAATTTCATCCAATGCTGGAGTGAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGACCTGATGGGAAGAAAATACGTCTGGGAATATCAGCCAGTGTTATCTCCGAGCTCACAGACTGTAATGCTGCTCTTTCACAACAAAGGAAGAAGCGGCAGATACCTCCTACGTTAGTTCCTATTGAGGCTGTAGAAAGTTACACTCAGATCTCTAGTCATCCACTACATAAAACAAACAAACCAGGGATTATATCTCTTGACATCCATCACGACAAGGATGTCATTGCGACTGGAGGGCAGGACACAAATGCTGTTGTTTTTGATCGATCATCTGGGGAAATTTTATCCACACTGAGTGGCCATTCCAAGAAGGTAACAAGTGTCAAATTTGTTGGCCGGGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTCCGTGTGTGGCAACAATCTGATGATGGGATCTACAATTGTAGGCACATTTTAAAGGATCACACAGCTGAGGTTCAAGCTGTCACCGTCCATGCTACCAATAACTTCTTTGTTACTGCCTCCCTTGATAACACATGGTGTTTTTATGATCTTGCTTCTGGATCATGCCTGGCCCAGGTTGCAGAGGCTTCAGCAACGGAGGGCTACACGTCGGCTGCCTTTCATCCTGATGGTCTCATCCTCGGAACAGGCACGTCAGAAGCCCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCAAGATTTGATGGACACGTTGGGGCAGTAACTGCTATATCTTTTTCTGAAAATGGTTACTTCCTTGCGACCGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAATTTTCGTACATTTGCACCTTATGATTCAGAAACTTCAACAAACTATGTGGAATTTGACCATAGTGGATCTTACCTTGCGGTTGCTGGCTCAGATATAAGAGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGTATCAAAACTATTCCAGATTTATCTGGCACAGGTAAAGCAACCTGCCTAAAGTATGGTCCAGATGCAAAATACTTGGCAGTTGGATCCATGGATCGAAATCTTCGTATTTTCGGTGTGCCTGGGGAAGACGACCCCACGGAGACATAA 1428 44.05 MDDIVPIKIGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSISSNAGVNVNGKRVNEDEELGPDGKKIRLGISASVISELTDCNAALSQQRKKRQIPPTLVPIEAVESYTQISSHPLHKTNKPGIISLDIHHDKDVIATGGQDTNAVVFDRSSGEILSTLSGHSKKVTSVKFVGRDDLFLTGSADKTVRVWQQSDDGIYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYDLASGSCLAQVAEASATEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETSTNYVEFDHSGSYLAVAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKYGPDAKYLAVGSMDRNLRIFGVPGEDDPTET 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2668625 2679557 - Sed0027455.2 Sed12g0444 731400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0444 475 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 245 - -
Sed12g0444 475 Coils Coil 67 87 - -
Sed12g0444 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 384 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 CDD WD40 177 464 - -
Sed12g0444 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 343 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 SMART WD40_4 378 417 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 SMART WD40_4 251 290 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 SMART WD40_4 161 203 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 SMART WD40_4 424 465 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 SMART WD40_4 206 245 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 SMART WD40_4 293 334 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 SMART WD40_4 337 375 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 245 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 Pfam Prp19/Pso4-like 18 83 IPR013915 -
Sed12g0444 475 FunFam pre-mRNA-processing factor 19 150 466 - -
Sed12g0444 475 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 299 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 SUPERFAMILY WD40 repeat-like 173 464 IPR036322 GO:0005515(InterPro)
Sed12g0444 475 Gene3D - 153 466 IPR015943 GO:0005515(InterPro)
Sed12g0444 475 Pfam WD domain, G-beta repeat 339 375 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 Pfam WD domain, G-beta repeat 253 290 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 Pfam WD domain, G-beta repeat 309 334 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 Pfam WD domain, G-beta repeat 427 464 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 Pfam WD domain, G-beta repeat 208 244 IPR001680 GO:0005515(InterPro)
Sed12g0444 475 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 465 IPR038959 GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER)
Sed12g0444 475 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1438 Sed-Chr2:50476532 Sed12g0444 Sed-Chr12:2668625 3.40E-253 dispersed
Sed12g0443 Sed-Chr12:2668625 Sed12g0444 Sed-Chr12:2668625 2.40E-275 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0444 K10599 - csv:101204424 867.07