Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0444 | ATGGATGACATCGTTCCAATTAAAATTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGACGTGTTGGTGCTGTCCAATTTTGCACTAGAGCAACAACTGCATACAGCCAGACAGGAGCTAAGTCATGCCTTGTATCAGCATGATGCTGCATGTCGTGTAATTGCAAGACTTAAAAAGGAACGGGATGAGGCTCGGTCATTACTTGCTCAGGCAGAGAGGCAGATGCCTTTGTCATCAACTTCAATTTCATCCAATGCTGGAGTGAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGACCTGATGGGAAGAAAATACGTCTGGGAATATCAGCCAGTGTTATCTCCGAGCTCACAGACTGTAATGCTGCTCTTTCACAACAAAGGAAGAAGCGGCAGATACCTCCTACGTTAGTTCCTATTGAGGCTGTAGAAAGTTACACTCAGATCTCTAGTCATCCACTACATAAAACAAACAAACCAGGGATTATATCTCTTGACATCCATCACGACAAGGATGTCATTGCGACTGGAGGGCAGGACACAAATGCTGTTGTTTTTGATCGATCATCTGGGGAAATTTTATCCACACTGAGTGGCCATTCCAAGAAGGTAACAAGTGTCAAATTTGTTGGCCGGGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTCCGTGTGTGGCAACAATCTGATGATGGGATCTACAATTGTAGGCACATTTTAAAGGATCACACAGCTGAGGTTCAAGCTGTCACCGTCCATGCTACCAATAACTTCTTTGTTACTGCCTCCCTTGATAACACATGGTGTTTTTATGATCTTGCTTCTGGATCATGCCTGGCCCAGGTTGCAGAGGCTTCAGCAACGGAGGGCTACACGTCGGCTGCCTTTCATCCTGATGGTCTCATCCTCGGAACAGGCACGTCAGAAGCCCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCAAGATTTGATGGACACGTTGGGGCAGTAACTGCTATATCTTTTTCTGAAAATGGTTACTTCCTTGCGACCGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAATTTTCGTACATTTGCACCTTATGATTCAGAAACTTCAACAAACTATGTGGAATTTGACCATAGTGGATCTTACCTTGCGGTTGCTGGCTCAGATATAAGAGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGTATCAAAACTATTCCAGATTTATCTGGCACAGGTAAAGCAACCTGCCTAAAGTATGGTCCAGATGCAAAATACTTGGCAGTTGGATCCATGGATCGAAATCTTCGTATTTTCGGTGTGCCTGGGGAAGACGACCCCACGGAGACATAA | 1428 | 44.05 | MDDIVPIKIGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSISSNAGVNVNGKRVNEDEELGPDGKKIRLGISASVISELTDCNAALSQQRKKRQIPPTLVPIEAVESYTQISSHPLHKTNKPGIISLDIHHDKDVIATGGQDTNAVVFDRSSGEILSTLSGHSKKVTSVKFVGRDDLFLTGSADKTVRVWQQSDDGIYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYDLASGSCLAQVAEASATEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETSTNYVEFDHSGSYLAVAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKYGPDAKYLAVGSMDRNLRIFGVPGEDDPTET | 475 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2668625 | 2679557 | - | Sed0027455.2 | Sed12g0444 | 731400 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0444 | 475 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 213 | 245 | - | - | |
Sed12g0444 | 475 | Coils | Coil | 67 | 87 | - | - | |
Sed12g0444 | 475 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 344 | 384 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | CDD | WD40 | 177 | 464 | - | - | |
Sed12g0444 | 475 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 302 | 343 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | SMART | WD40_4 | 378 | 417 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | SMART | WD40_4 | 251 | 290 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | SMART | WD40_4 | 161 | 203 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | SMART | WD40_4 | 424 | 465 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | SMART | WD40_4 | 206 | 245 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | SMART | WD40_4 | 293 | 334 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | SMART | WD40_4 | 337 | 375 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 213 | 245 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | Pfam | Prp19/Pso4-like | 18 | 83 | IPR013915 | - | |
Sed12g0444 | 475 | FunFam | pre-mRNA-processing factor 19 | 150 | 466 | - | - | |
Sed12g0444 | 475 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 258 | 299 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | SUPERFAMILY | WD40 repeat-like | 173 | 464 | IPR036322 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | Gene3D | - | 153 | 466 | IPR015943 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | Pfam | WD domain, G-beta repeat | 339 | 375 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | Pfam | WD domain, G-beta repeat | 253 | 290 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | Pfam | WD domain, G-beta repeat | 309 | 334 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | Pfam | WD domain, G-beta repeat | 427 | 464 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | Pfam | WD domain, G-beta repeat | 208 | 244 | IPR001680 | GO:0005515(InterPro) | |
Sed12g0444 | 475 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 1 | 465 | IPR038959 | GO:0000398(InterPro)|GO:0000398(PANTHER)|GO:0000974(PANTHER)|GO:0000974(InterPro)|GO:0004842(PANTHER)|GO:0005737(PANTHER)|GO:0006281(InterPro)|GO:0061630(InterPro)|GO:0071006(PANTHER) | |
Sed12g0444 | 475 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 344 | 377 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1438 | Sed-Chr2:50476532 | Sed12g0444 | Sed-Chr12:2668625 | 3.40E-253 | dispersed | |
Sed12g0443 | Sed-Chr12:2668625 | Sed12g0444 | Sed-Chr12:2668625 | 2.40E-275 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0444 | K10599 | - | csv:101204424 | 867.07 |