Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0525 ATGGCTCAACAGGTAGCAGCAGCTCACCAAAATGGTTCATTGAAGAGCTTGTGTACCAGCCATGAAGATCCACTCAACTGGGGTGTGGCGGCTGAGTCGATGAAGGGAAGTCATTTGGATGAGGTCAAGCAGATGGTCGAGGAGTATCGGCGGCCTGTGGTGAAGCTTGGAGGACAGACTCTCACCATTTCCCAAGTGGCTGCTATTGCCACTCGGGATAATGATGTCGTTGTTGAATTGGCTGAGTCTGCGAGGGCCGGTGTCAAAGCTAGTAGTGATTGGGTGATGGATAGCATGAGTAAAGGTACTGATAGTTATGGTGTTACTACTGGCTTTGGTGCTACTTCCCATAGGAGAACCAAACAAGGTGGAGCTCTTCAAAAGGAGCTCATTCGATTTTTGAATGCTGGCATCTTTGGGAATGGAGCTGAGTCAAGCCACACTTTGCCACACTCTGCCACTAGAGCGGCCATGTTGGTGAGAATCAACACTCTTCTACAAGGCTACTCGGGTATTAGATTCGAGATTTTGGAAGGAATTGCTAACCTCTTGAACCACAACGTTACTCCATGCTTGCCACTTCGAGGAACAATTACTGCTTCGGGGGATTTGGTTCCTTTGTCCTATATTGCAGGGTTGCTCACAGGTCGTCATAATTCTAAAGCTATTGGACCTAATGGTGAAGTCCTTGATGCAAAGGCCGCTTTTGAACAAGCTGGTATTGAATCTGGATTCTTTGAGTTGCAACCAAAAGAAGGTCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGGTTGGCTTCCACTGTTCTTTTCGAGGCAAACATTTTGGCCGTTTTGTCCGAAATTCTATCTGCCATTTTTGCTGAGGTGATGCAAGGAAAGCCTGAATTCACTGACTATTTGACCCATAAGTTGAAGCACCATCCTGGCCAGATTGAAGCAGCTGCAATCATGGAACACATTTTAGATGGAAGCTCTTACATGAAAACAGCCAAGAAATTGCATGAAATGGATCCTCTCCAAAAGCCCAAGCAAGATCGTTACGCTCTTAGAACTTCTCCTCAATGGTTGGGTCCCTTGATTGAAGTGATCCGTTTCTCTACAAAGTCAATCGAGCGGGAGATCAATTCGGTTAATGATAACCCTTTGATTGATGTTTCAAGAAACAAGGCATTGCATGGAGGCAACTTTCAAGGAACACCGATTGGAGTTTCCATGGATAACACTCGTTTGGCCATTGCATCCATTGGGAAGCTCATGTTTGCCCAATTTTCAGAGTTAGTAAATGATTTTTACAACAACGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAACCCTAGCTTGGATTATGGATTTAAAGGTACTGAGATCGCCATGGCTTCATATTGCTCTGAGCTTCAGTATCTTGCAAATCCAGTGACAAGTCATGTCCAGAGCGCCGAACAACACAACCAAGATGTTAATTCTCTTGGTTTAATTTCCTCAAGGAAAACAGCTGAAGCCATCGATATTCTAAAACTTATGTCTTCCACATTTTTAGTTGCTTTGTGCCAAGCAGTTGACTTGAGGCATTTGGAGGAAAATCTAAAGAGCACGGTAAAAAACACGGTTAGCCAAGTAGCAAAAAAAGTGTTGACTACATCCTCTGATGGAGCACTTCACCCATCAAGATTTTGTGAAAAAGATCTACTCAAAGTTGTTGATAGAGAATACACATTTGCATACATTGATGATCCATGCAGTGCTACTTACCCATTGATGCAGAAGTTGAGGCAAGTTCTGGTTGACCATGCACTTGAAAATGGAGATGATGAAGTAAACCCAAATACTTCAATATTCCAAAAGATTAATGCCTTTGAAGAGGAATTAAAGGCAGTTTTACCAAACGAGGTTGAAAATGTAAGGTTGGAATATGAGGGTGGGAATTCCAAAATTCCAAATCAGATTAAGGATTGCAGATCTTATCCATTATATAGATTTGTGAGAGAGGAGTTGGGAACAAATTTGCTCACGGGAGAAAGGGTTATATCTCCAGGAGAAGAGTGTGAAAAGGTATTCACAGCTTTGTGTCAAGGAAAGATGATCGACTCTATCTTTGAGTGCCTTAAAGAATGGAATGGAGCTCCAATCCCTATTTGCTAA 2145 42.98 MAQQVAAAHQNGSLKSLCTSHEDPLNWGVAAESMKGSHLDEVKQMVEEYRRPVVKLGGQTLTISQVAAIATRDNDVVVELAESARAGVKASSDWVMDSMSKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEGIANLLNHNVTPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGEVLDAKAAFEQAGIESGFFELQPKEGLALVNGTAVGSGLASTVLFEANILAVLSEILSAIFAEVMQGKPEFTDYLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGTEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAVDLRHLEENLKSTVKNTVSQVAKKVLTTSSDGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVDHALENGDDEVNPNTSIFQKINAFEEELKAVLPNEVENVRLEYEGGNSKIPNQIKDCRSYPLYRFVREELGTNLLTGERVISPGEECEKVFTALCQGKMIDSIFECLKEWNGAPIPIC 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3180763 3183169 + Sed0012846.1 Sed12g0525 731481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0525 714 Gene3D - 15 260 IPR024083 -
Sed12g0525 714 FunFam Phenylalanine ammonia-lyase 261 562 - -
Sed12g0525 714 Pfam Aromatic amino acid lyase 61 539 IPR001106 -
Sed12g0525 714 Gene3D - 527 648 IPR023144 -
Sed12g0525 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Sed12g0525 714 FunFam Phenylalanine ammonia-lyase 14 260 - -
Sed12g0525 714 SUPERFAMILY L-aspartase-like 22 714 IPR008948 GO:0003824(InterPro)
Sed12g0525 714 NCBIfam phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Sed12g0525 714 CDD PAL-HAL 59 524 IPR001106 -
Sed12g0525 714 PANTHER HISTIDINE AMMONIA-LYASE 20 714 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Sed12g0525 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841(InterPro)
Sed12g0525 714 FunFam Phenylalanine ammonia-lyase 527 648 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0951 Sed-Chr2:47049157 Sed12g0525 Sed-Chr12:3180763 0.00E+00 dispersed
Sed05g2829 Sed-Chr5:39482796 Sed12g0525 Sed-Chr12:3180763 0.00E+00 dispersed
Sed05g2830 Sed-Chr5:39482796 Sed12g0525 Sed-Chr12:3180763 1.60E-283 dispersed
Sed10g1807 Sed-Chr10:35128698 Sed12g0525 Sed-Chr12:3180763 0.00E+00 dispersed
Sed12g0525 Sed-Chr12:3180763 Sed14g0397 Sed-Chr14:4102041 0.00E+00 dispersed
Sed12g0524 Sed-Chr12:3174200 Sed12g0525 Sed-Chr12:3180763 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0525 K10775 - csv:116401606 1322.38