Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0574 ATGATTGCGAGCGCTAATTTTCCGGCAGAAGTTTTGGACGTAGAAACAATGATGGAACAGAAAAGGAACCTTTGCTCTGTTGATGAGGGCAGTCTCACTTCTCTTACATCCAAGCGACACAAAACTGATTTTCCTATCTCCTCTAAGGAAAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTAAGGAGGCGATGGAATATATTCAATTTCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACGGTTCATTTTCAGGAGCTGGAACCGTACAACCACGGCCTGAGGAACAGAGGTTTATGTCTGGTTCCGATCTCGTGTACGGCCGGAGTTACACACAGCAACGGTGCAGATATTTGGGCTCCTGTAAAGACAACTTCCCCCAAACTTGAAAAGGCAATCTCACCATTCAATTGA 486 45.27 MIASANFPAEVLDVETMMEQKRNLCSVDEGSLTSLTSKRHKTDFPISSKERKDKLGERIMALQQLVSPYGKTDTASVLKEAMEYIQFLHEQVKVLSAPYLQSTPTVHFQELEPYNHGLRNRGLCLVPISCTAGVTHSNGADIWAPVKTTSPKLEKAISPFN 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3476681 3481994 + Sed0020683.1 Sed12g0574 731530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0574 161 SMART finulus 45 94 IPR011598 GO:0046983(InterPro)
Sed12g0574 161 FunFam Transcription factor bHLH113 family 38 114 - -
Sed12g0574 161 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983(InterPro)
Sed12g0574 161 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 132 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Sed12g0574 161 Pfam Helix-loop-helix DNA-binding domain 49 89 IPR011598 GO:0046983(InterPro)
Sed12g0574 161 CDD bHLH_AtbHLH_like 45 96 IPR045239 -
Sed12g0574 161 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 104 IPR036638 GO:0046983(InterPro)
Sed12g0574 161 Gene3D - 36 106 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0991 Sed-Chr2:47344280 Sed12g0574 Sed-Chr12:3476681 4.80E-70 dispersed
Sed02g0992 Sed-Chr2:47344280 Sed12g0574 Sed-Chr12:3476681 1.50E-68 dispersed
Sed02g0993 Sed-Chr2:47344280 Sed12g0574 Sed-Chr12:3476681 1.70E-43 dispersed
Sed02g0994 Sed-Chr2:47344280 Sed12g0574 Sed-Chr12:3476681 1.30E-46 dispersed
Sed12g0574 Sed-Chr12:3476681 Sed13g1153 Sed-Chr13:13532768 3.00E-27 dispersed
Sed12g0574 Sed-Chr12:3476681 Sed12g0575 Sed-Chr12:3476681 6.90E-80 tandem
Sed03g0070 Sed-Chr3:431533 Sed12g0574 Sed-Chr12:3476681 1.20E-13 transposed
Sed12g0574 Sed-Chr12:3476681 Sed02g0988 Sed-Chr2:47344280 1.50E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40115 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0574 - - - 0.0