Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0575 ATGATGGAACAGAAAAGGAACCTTTGCTCTGTTGATGAGGGCAGTCTCACTTCTCTTACATCCAAGCGACACAAAACTGATTTTCCTATCTCCTCTAAGGAAAGGAAAGACAAACTGGGTGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATACGGAAAGACAGATACGGCATCTGTTCTTAAGGAGGCGATGGAATATATTCAATTTCTTCACGAGCAAGTCAAGGTGTTGAGTGCTCCATATCTCCAAAGCACACCCACGGTTCATTTTCAGGAGCTGGAACCGTACAACCACGGCCTGAGGAACAGAGGTTTATGTCTGGTTCCGATCTCGTGTACGGCCGGAGTTACACACAGCAACGGTGCAGATATTTGGGCTCCTGTAAAGACAACTTCCCCCAAACTTGAAAAGGCAATCTCACCATTCAATTGA 438 45.43 MMEQKRNLCSVDEGSLTSLTSKRHKTDFPISSKERKDKLGERIMALQQLVSPYGKTDTASVLKEAMEYIQFLHEQVKVLSAPYLQSTPTVHFQELEPYNHGLRNRGLCLVPISCTAGVTHSNGADIWAPVKTTSPKLEKAISPFN 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3476681 3481994 + Sed0020683.2 Sed12g0575 731531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0575 145 CDD bHLH_AtbHLH_like 29 80 IPR045239 -
Sed12g0575 145 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 28 88 IPR036638 GO:0046983(InterPro)
Sed12g0575 145 Gene3D - 21 91 IPR036638 GO:0046983(InterPro)
Sed12g0575 145 FunFam Transcription factor bHLH113 family 22 98 - -
Sed12g0575 145 Pfam Helix-loop-helix DNA-binding domain 33 73 IPR011598 GO:0046983(InterPro)
Sed12g0575 145 SMART finulus 29 78 IPR011598 GO:0046983(InterPro)
Sed12g0575 145 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 23 72 IPR011598 GO:0046983(InterPro)
Sed12g0575 145 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 24 116 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0070 Sed-Chr3:431533 Sed12g0575 Sed-Chr12:3476681 1.20E-13 dispersed
Sed12g0575 Sed-Chr12:3476681 Sed13g1153 Sed-Chr13:13532768 3.00E-26 dispersed
Sed12g0574 Sed-Chr12:3476681 Sed12g0575 Sed-Chr12:3476681 6.90E-80 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40116 PF00010 HLH 0.00029 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0575 - - - 0.0