Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0617 ATGATGGAAAGTTACCAAAATTTTCTCTCAACTTCATCCTCTTCAACCTCCCTCCCTCTTCACCAAATGCTAATCCATGGAGGCCATTTTTGGCAGCCGCCCGTCTCGGATGCGTTGATCCCGGGGCTTCACAACGTCTCAGGGAGCGACATGTCGATCGATGCAACGAGTGGGATGAAGAACGATGCCGCTTCACTCGGTAAGAGCTTCTATGTCGATGAGTCAAATGGGTTGAAAAAGGAGAATGCCATGGGAGCAGGAGTAGCGACGACAACGACGACGATGGCAGGGACGGGACGAAGAGATTATGATAATAAAATGAAGACGAGAGGGCGGAAATTTGCGTTTCAAACGAGGAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAGTATGGACAAAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTACTATAAATGTACACAACAAGGTTGCAAAGTGAAGAAGCAAGTGCAAAGGCTAGCAAGAGATGAAGGTGTGGTTGTGACAACTTATGAAGGCATTCACTCTCATCCAGTTGAGAAATGTATAGACAACTTTGAGCACATTTTGACTCAGATGCAAATTTACCCTTCTTCTTGA 615 44.88 MMESYQNFLSTSSSSTSLPLHQMLIHGGHFWQPPVSDALIPGLHNVSGSDMSIDATSGMKNDAASLGKSFYVDESNGLKKENAMGAGVATTTTTMAGTGRRDYDNKMKTRGRKFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYKCTQQGCKVKKQVQRLARDEGVVVTTYEGIHSHPVEKCIDNFEHILTQMQIYPSS 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3657534 3659950 + Sed0001875.1 Sed12g0617 731573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0617 204 SUPERFAMILY WRKY DNA-binding domain 117 184 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0617 204 SMART WRKY_cls 125 184 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0617 204 Pfam WRKY DNA -binding domain 126 183 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0617 204 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 86 185 IPR044810 GO:0003700(InterPro)
Sed12g0617 204 ProSiteProfiles WRKY domain profile. 120 185 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0617 204 Gene3D WRKY domain 110 185 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0617 204 FunFam WRKY transcription factor 57 111 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1496 Sed-Chr8:29461552 Sed12g0617 Sed-Chr12:3657534 4.30E-40 dispersed
Sed12g0130 Sed-Chr12:725907 Sed12g0617 Sed-Chr12:3657534 1.20E-29 dispersed
Sed12g0617 Sed-Chr12:3657534 Sed13g0848 Sed-Chr13:6213979 2.30E-27 dispersed
Sed12g0617 Sed-Chr12:3657534 Sed02g1004 Sed-Chr2:47431827 6.50E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40122 PF03106 WRKY 4.50E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0617 - - - 0.0