Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0637 ATGGGGTTATTCTTGTTTGTGGATTTGATGTGTGGTTGGAGAGTTGGATTGGTTGTTTTTGCAAATATGTGTTTGTTGGTGTCTGGTTTAGGTTCTATGTCTTCTGCTGCTGTTTCTTATGGTGAGAAAGGGTCTGTTTTCTGTGGTTTAAAGTCAGATGGGTCTCATCTTGTGAGCTGTTTTGGTTCTAATTCAGCTATAACTTATGGAACCCCTTCACATTTCCCATTCATTGGCCTAACTGCTGGTGATGGTTTTGTTTGTGGGCTTCTTTTGGATTCTAACCAACCTTATTGTTGGGGAAGTAGTGGCTATGTTCAAATGGGTGTTCCTCAACCCATGAACAAAGGTGCTAAATATATGGAGATTAGTGCTGGTGATCACCATCTGTGTGGACTCCGAATGCCTCTTACCGGAAGGGGTAGGAATTCGTCTTTTGTCGATTGTTGGGGTTACAACATGACCAGGAACTTTGTATTTGATGGCCCGATTGAATCGATCTCTGCGGGGTCGGAGTTTAACTGTGGATTGTTTTCTCTTAATAGAACTGTTTTCTGTTGGGGTGATGAGACAAGCAGCAGGGTAATCAGTTTGAGACCTAAAGGTATGAGGTTTCAAAAGATTGCATCGGGTGGATATCATGTTTGCGGGATCTTAGAGGGTGCGTTGGCGAGGGCTTTTTGTTGGGGAAAGAGCTTAGACATTGAAGAAGAGATTTCAGTTGCGTATTCTGGTGAAGGAAATGTAGACTTGGTGCCAATTGATCCATTAGACTCTGTTGTTGGGGGCAAATTCCATGCTTGTGGAATCAAGAGCTTGGACCGGGGTGTGATTTGTTGGGGTTTTACGGTGAAATCGAGTACTCCAGCACCGGATGGGATTAAAGTTTACTACATTGCAGCTGGAGATTACTTCACCTGTGGAATTCTAGCGGAAAAATCTCTCCTCCCTGTTTGCTGGGGTCTTGGATTTCCTACTTCTCTACCTGTAGCTGTCTCACCTGGAATCTGTAAAGCTACTCCTTGTGCTCCTGGTTTCTATGAAATAGGCCAAGACGAGGCTCGGTGTAAGTCGCCGAGTTATCACGTGTGTATGCCCTGCAGTACTACTTGCCCTCCTGAGATGTACCCAAAATTTGAGTGCTCCTTAAAATCAGATAGGCACTGTGAATATAACTGTTCAAGTTGCATTTCTTCTGAATGTTCCTCAAACTGCTCAAATGGTATGATAGGGAAGAAAACTGAGAAGTTTTTGTCAATGCAGCTTCCAGCTCTTGTAGCTGAGATTTCATTTGCCGTGTTTTTGGTAGCTATTGTGTCTATAACTGCATTCTTATACGTTCGGTACAAGTTACGGAACTGCCATTGCTCGGGAAAGGAATTGAACTCCAAGAAAAACAAAGGGACCGCCTCTTCCTTCCACAAGGAAAACTGCAAAATACGCCCCGTCATAGACGAGCTAAAGATAAGAAGGGCTCAGATGTTCACCTATGAAGAACTTGAGTTAGCAACGTGTGGATTTAAGAAAGAGTCTATTGTGGGAAAGGGGAGTTTCTCTTGTGTTTTCCGAGGGGATTTAAAGGACGGGACGGTTGTTGCGGTTAAACGGGCTATAATGTCTCCCAACAAGCAGAAGTATTCAAAAGAGTTTCACACTGAACTTGACTTGCTGTCAAGATTAAACCATGCCCATTTGCTTAATCTGCTTGGTTATTGTGAAGAAGGTGGAGAGAGGCTTCTAGTTTATGAGTTCATGGCTCATGGTTCTTTGTATCAACACCTCCATGGCAAGAACAATTCCTTAAAAGAACAATTAGATTGGATAAGAAGGGTCACAATTGCAGTCCAAGCAGCAAGGGGAATCGAATACTTGCATGGCTACGCTTGTCCTCCTGTCATTCATCGGGACATCAAGTCGTCAAACATTCTCATTGACGAAGAGCATAATGCTCGAGTCGCTGACTTTGGCTTGTCATTGTTGGGACCGACCGATAGTAACTCACCATTAGCTGCGCTACCAGCTGGAACACTTGGCTATCTAGATCCTGAATACTATAAACTTCATTACCTTACAACGAAGTCCGATGTCTATAGCTTTGGTGTTTTGCTACTCGAAATTCTCAGTGGTAGAAAAGCCATTGATTTGCAATATGATGAAGGGAACATAGTAGAATGGGCAGTGCCTCTGATCAAATCTGGAGATATCTCTGCAATTTTAGATCCAATACTGAAACTGCCACCCGATATCGAGGCCTTGAAGAGGATCGCAAACGTAGGTTGTAAATGCGTGAGAATGACAGCAAAGGAGAGGCCATCAATGGATAAAGTGACAACTGCATTGGAGCGCGCTCTTGCCCAATTAATGGGAAGCCCGTGTAATGAACAACCGATCTTACCAACCGAGGTGGTTTTGGGAAGCAATAGACTACACAAAAAGTCATCCCAAAGATCATGGAACCAATCGGTCTCCGAAACGGATATAGCAGAAGCCGAGGATCAAAGGTCTGAGTTCAGAGCTCCATCGTGGATTACATTCCCGAGCGTGACATCGTCCCAGAGGCGGAAATCCTCAGTGTCAGAAGCAGATGTTGAAGGAAAGAATTCGGAAGGGAGAAATGTAAGCAACTGTGATGGATTGAAGAGTTTAGAGGAAGAGATTGGACCTGCTTCCCCTCATGAAAAGTTGTTCTTGGAGCACAATTTCTAA 2706 43.9 MGLFLFVDLMCGWRVGLVVFANMCLLVSGLGSMSSAAVSYGEKGSVFCGLKSDGSHLVSCFGSNSAITYGTPSHFPFIGLTAGDGFVCGLLLDSNQPYCWGSSGYVQMGVPQPMNKGAKYMEISAGDHHLCGLRMPLTGRGRNSSFVDCWGYNMTRNFVFDGPIESISAGSEFNCGLFSLNRTVFCWGDETSSRVISLRPKGMRFQKIASGGYHVCGILEGALARAFCWGKSLDIEEEISVAYSGEGNVDLVPIDPLDSVVGGKFHACGIKSLDRGVICWGFTVKSSTPAPDGIKVYYIAAGDYFTCGILAEKSLLPVCWGLGFPTSLPVAVSPGICKATPCAPGFYEIGQDEARCKSPSYHVCMPCSTTCPPEMYPKFECSLKSDRHCEYNCSSCISSECSSNCSNGMIGKKTEKFLSMQLPALVAEISFAVFLVAIVSITAFLYVRYKLRNCHCSGKELNSKKNKGTASSFHKENCKIRPVIDELKIRRAQMFTYEELELATCGFKKESIVGKGSFSCVFRGDLKDGTVVAVKRAIMSPNKQKYSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLYQHLHGKNNSLKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPTDSNSPLAALPAGTLGYLDPEYYKLHYLTTKSDVYSFGVLLLEILSGRKAIDLQYDEGNIVEWAVPLIKSGDISAILDPILKLPPDIEALKRIANVGCKCVRMTAKERPSMDKVTTALERALAQLMGSPCNEQPILPTEVVLGSNRLHKKSSQRSWNQSVSETDIAEAEDQRSEFRAPSWITFPSVTSSQRRKSSVSEADVEGKNSEGRNVSNCDGLKSLEEEIGPASPHEKLFLEHNF 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3788138 3791770 - Sed0007298.1 Sed12g0637 731593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0637 901 Gene3D - 160 337 IPR009091 -
Sed12g0637 901 MobiDBLite consensus disorder prediction 848 878 - -
Sed12g0637 901 Gene3D Phosphorylase Kinase; domain 1 481 584 - -
Sed12g0637 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0637 901 MobiDBLite consensus disorder prediction 814 833 - -
Sed12g0637 901 SUPERFAMILY Protein kinase-like (PK-like) 488 780 IPR011009 -
Sed12g0637 901 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 25 829 - -
Sed12g0637 901 SUPERFAMILY RCC1/BLIP-II 30 232 IPR009091 -
Sed12g0637 901 FunFam Serine/threonine-protein kinase-like protein CR4 29 196 - -
Sed12g0637 901 FunFam Receptor protein kinase CRINKLY4 585 787 - -
Sed12g0637 901 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 341 389 IPR001368 GO:0005515(InterPro)
Sed12g0637 901 ProSiteProfiles Protein kinase domain profile. 507 784 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0637 901 SUPERFAMILY RCC1/BLIP-II 226 334 IPR009091 -
Sed12g0637 901 Gene3D - 22 159 IPR009091 -
Sed12g0637 901 SMART serkin_6 507 784 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0637 901 Pfam Protein tyrosine and serine/threonine kinase 509 779 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0637 901 ProSitePatterns Protein kinases ATP-binding region signature. 513 535 IPR017441 GO:0005524(InterPro)
Sed12g0637 901 Gene3D Transferase(Phosphotransferase) domain 1 585 792 - -
Sed12g0637 901 FunFam serine/threonine-protein kinase-like protein CCR1 477 584 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2004 Sed-Chr3:13917549 Sed12g0637 Sed-Chr12:3788138 1.10E-77 dispersed
Sed05g1317 Sed-Chr5:25757770 Sed12g0637 Sed-Chr12:3788138 2.50E-63 dispersed
Sed10g1695 Sed-Chr10:33824359 Sed12g0637 Sed-Chr12:3788138 2.40E-82 dispersed
Sed12g0637 Sed-Chr12:3788138 Sed05g1911 Sed-Chr5:32475863 5.10E-63 dispersed
Sed12g0637 Sed-Chr12:3788138 Sed06g1178 Sed-Chr6:34661182 4.60E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79969 PF07714 PK_Tyr_Ser-Thr 2.00E-43 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0637 - - - 0.0