Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0643 ATGGCGAACACAATGGCTAGATCTTTCCTGCAGGTCGCTGCCACCGAAGAAGTAGCTTCCCCTCTCCGAGTAGTTCAGATTGAAGGATTGGCTATATTGAAGATAATCAAGCATTGCAAGGAGTTTTCACCGTCCCTTGTGACCGGGCAACTCCTTGGGTTAGATGTTGGTAGCGTTCTTGAAGTCACTAATTGTTTTCCCTTCCCGACTCGGGAGGAGGATGAGGAGATTGAGGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGATGTCTGAGAGAAGTCAATGTTGATAATAATACTGTCGGATGGTACCAGTCAACCTTCTTAGGTTCATATCAGACAGTAGAGCTGATTGAGACCTTTATGAATTATCAGGAAAACATTAGGCGGTGTGTCTGCATAATTTATGACCCATCAAGGTCTAATCAAGGTGTCTTAGCTCTCAAGGCATTGAAGCTTTCAGATTCTTTTATGGAGCTTTACCGTAGTAACAACTTTATAGGAGAGAAGTTGAGGGAGAAGAACTTATCATGGGTGGATATTTTTGAGGAAATACCTATCAAAGTTTCAAACTCAGCCCTCATTAGTGCTTTTATGACGGAGCTTGAAGCTGAGTCTCCAGTTACTCAGTGTGATTATGATCGCCTGCAACTTTCAACCAACCCGTTTATGGAGAGGAATGTGGAATTTCTGATCGAATGTATGGACGATTTATCGGCGGAGCAGCAGAAGTTCCAGTTCTATTATCGCAGCCTAACTCGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAGAAGAGAAGGGCCGAGAATGCGATGAGAAAGGCAGCAGGAGAAGATCCTCTCCCTGAGGAGGATCCTGCAAACCCCATCTTTAAGTCACTCCCCGAGCCATCGCGTTTGGACAGCTATCTCATAACGAATCAAGTAGCAAACTACTGCAACCAAATTAATGGGGTTGCTGGACAGAGTTTCAACAGACTTCATTTGATGAAGGCTCTGCATGACAATTAG 1014 44.58 MANTMARSFLQVAATEEVASPLRVVQIEGLAILKIIKHCKEFSPSLVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSNNFIGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEAESPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSAEQQKFQFYYRSLTRQQAQQQAWLQKRRAENAMRKAAGEDPLPEEDPANPIFKSLPEPSRLDSYLITNQVANYCNQINGVAGQSFNRLHLMKALHDN 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3839349 3844402 + Sed0019335.1 Sed12g0643 731599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0643 337 Pfam C-terminal region of eIF3h 143 335 IPR045810 -
Sed12g0643 337 CDD MPN_eIF3h 23 286 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed12g0643 337 SMART pad1_6 24 157 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Sed12g0643 337 Gene3D Cytidine Deaminase, domain 2 2 215 - -
Sed12g0643 337 ProSiteProfiles MPN domain profile. 25 158 IPR037518 -
Sed12g0643 337 FunFam Eukaryotic translation initiation factor 3 subunit H 4 213 - -
Sed12g0643 337 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 22 127 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Sed12g0643 337 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 20 337 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Sed12g0643 337 MobiDBLite consensus disorder prediction 269 294 - -
Sed12g0643 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 9 328 IPR050242 GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005852(PANTHER)|GO:0008237(PANTHER)|GO:0016282(PANTHER)|GO:0042788(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0643 Sed-Chr12:3839349 Sed02g1024 Sed-Chr2:47611018 1.50E-185 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0643 K03247 - csv:101211860 645.966