Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0643 | ATGGCGAACACAATGGCTAGATCTTTCCTGCAGGTCGCTGCCACCGAAGAAGTAGCTTCCCCTCTCCGAGTAGTTCAGATTGAAGGATTGGCTATATTGAAGATAATCAAGCATTGCAAGGAGTTTTCACCGTCCCTTGTGACCGGGCAACTCCTTGGGTTAGATGTTGGTAGCGTTCTTGAAGTCACTAATTGTTTTCCCTTCCCGACTCGGGAGGAGGATGAGGAGATTGAGGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGATGTCTGAGAGAAGTCAATGTTGATAATAATACTGTCGGATGGTACCAGTCAACCTTCTTAGGTTCATATCAGACAGTAGAGCTGATTGAGACCTTTATGAATTATCAGGAAAACATTAGGCGGTGTGTCTGCATAATTTATGACCCATCAAGGTCTAATCAAGGTGTCTTAGCTCTCAAGGCATTGAAGCTTTCAGATTCTTTTATGGAGCTTTACCGTAGTAACAACTTTATAGGAGAGAAGTTGAGGGAGAAGAACTTATCATGGGTGGATATTTTTGAGGAAATACCTATCAAAGTTTCAAACTCAGCCCTCATTAGTGCTTTTATGACGGAGCTTGAAGCTGAGTCTCCAGTTACTCAGTGTGATTATGATCGCCTGCAACTTTCAACCAACCCGTTTATGGAGAGGAATGTGGAATTTCTGATCGAATGTATGGACGATTTATCGGCGGAGCAGCAGAAGTTCCAGTTCTATTATCGCAGCCTAACTCGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAGAAGAGAAGGGCCGAGAATGCGATGAGAAAGGCAGCAGGAGAAGATCCTCTCCCTGAGGAGGATCCTGCAAACCCCATCTTTAAGTCACTCCCCGAGCCATCGCGTTTGGACAGCTATCTCATAACGAATCAAGTAGCAAACTACTGCAACCAAATTAATGGGGTTGCTGGACAGAGTTTCAACAGACTTCATTTGATGAAGGCTCTGCATGACAATTAG | 1014 | 44.58 | MANTMARSFLQVAATEEVASPLRVVQIEGLAILKIIKHCKEFSPSLVTGQLLGLDVGSVLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSNNFIGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEAESPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSAEQQKFQFYYRSLTRQQAQQQAWLQKRRAENAMRKAAGEDPLPEEDPANPIFKSLPEPSRLDSYLITNQVANYCNQINGVAGQSFNRLHLMKALHDN | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3839349 | 3844402 | + | Sed0019335.1 | Sed12g0643 | 731599 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0643 | 337 | Pfam | C-terminal region of eIF3h | 143 | 335 | IPR045810 | - | |
Sed12g0643 | 337 | CDD | MPN_eIF3h | 23 | 286 | IPR027524 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Sed12g0643 | 337 | SMART | pad1_6 | 24 | 157 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
Sed12g0643 | 337 | Gene3D | Cytidine Deaminase, domain 2 | 2 | 215 | - | - | |
Sed12g0643 | 337 | ProSiteProfiles | MPN domain profile. | 25 | 158 | IPR037518 | - | |
Sed12g0643 | 337 | FunFam | Eukaryotic translation initiation factor 3 subunit H | 4 | 213 | - | - | |
Sed12g0643 | 337 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 22 | 127 | IPR000555 | GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro) | |
Sed12g0643 | 337 | Hamap | Eukaryotic translation initiation factor 3 subunit H [EIF3H]. | 20 | 337 | IPR027524 | GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro) | |
Sed12g0643 | 337 | MobiDBLite | consensus disorder prediction | 269 | 294 | - | - | |
Sed12g0643 | 337 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED | 9 | 328 | IPR050242 | GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005852(PANTHER)|GO:0008237(PANTHER)|GO:0016282(PANTHER)|GO:0042788(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g0643 | Sed-Chr12:3839349 | Sed02g1024 | Sed-Chr2:47611018 | 1.50E-185 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0643 | K03247 | - | csv:101211860 | 645.966 |