Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0651 ATGTCCAGGACTCGATGCAAGTCCATTCCCTTCAAGACCGACCGGCAGCCGATCGCCGCCGCCGCCGCCGTGACGCCGAAAACGCCGCTTTCTTGTTCCACATCCCTCATTCCTCCCTCACTCAAATCGGTTTCTCTGTACGATTGGTGGCTGCTTAAGGTTGATGATGGCAAGGGCTTGGCTGTTGGAGGATTCTCTTCCAGAGAAAGAGCTGGGTTAAGAGTATTTTACTCTGCAGCGATTTCTAAGAGACATGAAGCCACCACTCTCGAGGCAGCAGATGGCATTATCATTACAGTCAGCGGCATCATAAATCGATCACGAACACATGAGAATGGCTTTCCGCCGAAGGTGTACAATCGTTTCCTTCTTGGTTTTCCCTTCAATTGGAAAGATTATATGGGCTCTAGTTCAGATAAAATATCTCAATCCGAGTGTAGTACTTCTCCTTCTGACCATCAAGGTAGAAGCCATAATTTAGATAATCTTGCAGTAACTAGGTTGCAAGATCTCTTCTTGATCTCTTATGGAGAATCTAATCATGATCTCTTTATGAAGAGCTTAAATTCAAGTTGTAGTCCAACAAAAGAGTGTGAATCTGGACTAGAGACCCCGAAAGGAACTCGACGAGTAAATTCCCATCAAGATCTCAAGGAGCAAGGTTTCTGGGATGAGGGGAAGAATGGTGCTGTAAAGGATCCATTGCACACTAGTCAAGAAACTAAATCTAAGGTGGAAAATGAACACCAGATTCTAGGAAGCAGAGGTGTTTGCACAAGAAGCATGGCAAAGTTGAAAAATTCTAGTAACAGAAGTAAAGAGAGGGTTGCATCAAATTCTCAAAAAAGGATAAAGAGTCAGGAGAATAGCTCTACATGTGAAAACTCAGGAAAGGGAACTGGACTGAGAGTTAAAAGTAGCTCAAATGTTGCTATGTCAACAACTGATTTTTCGATTAGTTCGGGTAAGGAAGTTAATGTAATCACAGATAAACCTAAGAGTAGAAGATCAAGTCTTAGGCTAAGGAACCGAAAGCAGAATCAATAG 1047 43.08 MSRTRCKSIPFKTDRQPIAAAAAVTPKTPLSCSTSLIPPSLKSVSLYDWWLLKVDDGKGLAVGGFSSRERAGLRVFYSAAISKRHEATTLEAADGIIITVSGIINRSRTHENGFPPKVYNRFLLGFPFNWKDYMGSSSDKISQSECSTSPSDHQGRSHNLDNLAVTRLQDLFLISYGESNHDLFMKSLNSSCSPTKECESGLETPKGTRRVNSHQDLKEQGFWDEGKNGAVKDPLHTSQETKSKVENEHQILGSRGVCTRSMAKLKNSSNRSKERVASNSQKRIKSQENSSTCENSGKGTGLRVKSSSNVAMSTTDFSISSGKEVNVITDKPKSRRSSLRLRNRKQNQ 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3886801 3889391 - Sed0019898.1 Sed12g0651 731607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0651 348 MobiDBLite consensus disorder prediction 282 327 - -
Sed12g0651 348 MobiDBLite consensus disorder prediction 220 348 - -
Sed12g0651 348 MobiDBLite consensus disorder prediction 220 249 - -
Sed12g0651 348 PANTHER KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG 15 340 IPR053090 -
Sed12g0651 348 Pfam SANTA (SANT Associated) 44 133 IPR015216 -
Sed12g0651 348 MobiDBLite consensus disorder prediction 267 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0651 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1152 . . . . . . . . . . Cma06g01637 . Car06g01392 . Sed12g0651 Cpe08g00091 . Bhi01g02650 Tan10g1252 Cmetu07g1677 . Hepe05g1258 . Lcy11g1201 . . . . . . . . . . . . . . Cme07g01869 . . . . . . . Bma06g01425 . Cmo06g01636 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013545 0 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40123 PF09133 SANTA 1.00E-23 No_clan Sed TR