Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0658 ATGGAAGTTCGAGAGCGAAATCCAAATGTAGGGACTGGCGATGTGAATTTCTATTTTGCACATGCTGTAGCTTATGTATGCTTGCTTCCAGGTGTTGGAAGTGTTACAGCATTTCTTGTTATGCTTCTCCTGGTTTACAAAGTTTATCAACTTGTAAAGAAAAGAAGGCACAAGTTTGACAAGGAAAAGTTCTTCAAGCAAAATGGTGGCAGCTTATTAGAGAAAAAGCTTCAAGGAATGGAGAAAAAAGTAAAATTATTCACAAAAGGAGAGTTAAAAAGGGCTACAGATAACTACAGCCACAGTAGATTTCTTGGTCAAGGAGGATATGGTACGGTTTACAAAGGAAATCTTCGAGACGGCACCATTGTTGCCGTAAAAAGATCGAACCAAATCAATAAGAAATGGATCGAGCACTTCATCAATGAAGTTATTGCCCTTTCTGAAATCAACCATCGAAATGTCGTTAAACTTTTTGGTTGTTGTTTAGAGACTAAGCTTCCCTTGCTGGTTTATGAATTTGTTCCAAATAGAACCCTTTCTGATCATATCCACAAAAAGGGTCATGAAGATTCATCTCCTCTTTCGTGGGAAATTCGTCTCAGGATCGCCTCCGAAGTTGCTGGAGCTATAGCTTACATGCATTCCGCTGCTTCTGTACCTATTATCCATCGAGATATCAAGTCTTCGAACATACTTTTGGATCATAACTACAATGCGAAAGTATCCGATTTTGGGACATCGAGGTTTGTACCTAATGATCAATCTCATTTAACCACAAAAGTGCAAGGAACATTAGGCTATATCGATCCCGAGTATTTTCGATCAAGTATATTAACTGAAAAAAGCGATGTTTATAGTTTCGGAGTCTTGATGGTAGAGCTCTTGACGGGAAAACAACCCTTCTCTTTTGCAGAAGATGAGGGAAAGAATCTATTGGAGTACTTCATTTCATTGGAAAAAGAGAACCAACTTGTTGAAATTCTAGATGGGGTAGTAGCAAGAGAGGCAAAAATGGAGGATGTTAGTTATGTTGCAAAGTTAGCAATTGGATGTTTGAGATTGAATGGGAAAAGAAGGCCTACCATGAAACAAGTATTTTTGGAACTAGAAGGGTTGAGGAAGTCACAAGATTATGTAGATTTTGTTGAAGAAAATCAATCAAGTGGGAGTTTTGCTATTCCCAATGCAAGTACTAGCTATGAAGAGCTTACAGATGATGACATTGTATCTCTTGAAATTGAAACACTGTAA 1254 38.04 MEVRERNPNVGTGDVNFYFAHAVAYVCLLPGVGSVTAFLVMLLLVYKVYQLVKKRRHKFDKEKFFKQNGGSLLEKKLQGMEKKVKLFTKGELKRATDNYSHSRFLGQGGYGTVYKGNLRDGTIVAVKRSNQINKKWIEHFINEVIALSEINHRNVVKLFGCCLETKLPLLVYEFVPNRTLSDHIHKKGHEDSSPLSWEIRLRIASEVAGAIAYMHSAASVPIIHRDIKSSNILLDHNYNAKVSDFGTSRFVPNDQSHLTTKVQGTLGYIDPEYFRSSILTEKSDVYSFGVLMVELLTGKQPFSFAEDEGKNLLEYFISLEKENQLVEILDGVVAREAKMEDVSYVAKLAIGCLRLNGKRRPTMKQVFLELEGLRKSQDYVDFVEENQSSGSFAIPNASTSYEELTDDDIVSLEIETL 417
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 3913349 3921166 - Sed0028192.1 Sed12g0658 731614
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0658 417 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 31 376 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Sed12g0658 417 SUPERFAMILY Protein kinase-like (PK-like) 83 370 IPR011009 -
Sed12g0658 417 CDD STKc_IRAK 105 373 - -
Sed12g0658 417 ProSiteProfiles Protein kinase domain profile. 99 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0658 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0658 417 FunFam Wall-associated receptor kinase 2 71 174 - -
Sed12g0658 417 Gene3D Phosphorylase Kinase; domain 1 60 174 - -
Sed12g0658 417 Pfam Protein kinase domain 99 366 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0658 417 SMART serkin_6 99 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0658 417 Gene3D Transferase(Phosphotransferase) domain 1 175 393 - -
Sed12g0658 417 FunFam Wall-associated receptor kinase 2 175 391 - -
Sed12g0658 417 ProSitePatterns Protein kinases ATP-binding region signature. 105 127 IPR017441 GO:0005524(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g2083 Sed-Chr10:37283960 Sed12g0658 Sed-Chr12:3913349 4.50E-97 dispersed
Sed12g0658 Sed-Chr12:3913349 Sed12g1954 Sed-Chr12:30594098 4.30E-126 dispersed
Sed12g0658 Sed-Chr12:3913349 Sed02g0586 Sed-Chr2:43527057 1.10E-73 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79972 PF00069 Pkinase 3.90E-51 CL0016 Sed PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0658 - - - 0.0