Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0658 | ATGGAAGTTCGAGAGCGAAATCCAAATGTAGGGACTGGCGATGTGAATTTCTATTTTGCACATGCTGTAGCTTATGTATGCTTGCTTCCAGGTGTTGGAAGTGTTACAGCATTTCTTGTTATGCTTCTCCTGGTTTACAAAGTTTATCAACTTGTAAAGAAAAGAAGGCACAAGTTTGACAAGGAAAAGTTCTTCAAGCAAAATGGTGGCAGCTTATTAGAGAAAAAGCTTCAAGGAATGGAGAAAAAAGTAAAATTATTCACAAAAGGAGAGTTAAAAAGGGCTACAGATAACTACAGCCACAGTAGATTTCTTGGTCAAGGAGGATATGGTACGGTTTACAAAGGAAATCTTCGAGACGGCACCATTGTTGCCGTAAAAAGATCGAACCAAATCAATAAGAAATGGATCGAGCACTTCATCAATGAAGTTATTGCCCTTTCTGAAATCAACCATCGAAATGTCGTTAAACTTTTTGGTTGTTGTTTAGAGACTAAGCTTCCCTTGCTGGTTTATGAATTTGTTCCAAATAGAACCCTTTCTGATCATATCCACAAAAAGGGTCATGAAGATTCATCTCCTCTTTCGTGGGAAATTCGTCTCAGGATCGCCTCCGAAGTTGCTGGAGCTATAGCTTACATGCATTCCGCTGCTTCTGTACCTATTATCCATCGAGATATCAAGTCTTCGAACATACTTTTGGATCATAACTACAATGCGAAAGTATCCGATTTTGGGACATCGAGGTTTGTACCTAATGATCAATCTCATTTAACCACAAAAGTGCAAGGAACATTAGGCTATATCGATCCCGAGTATTTTCGATCAAGTATATTAACTGAAAAAAGCGATGTTTATAGTTTCGGAGTCTTGATGGTAGAGCTCTTGACGGGAAAACAACCCTTCTCTTTTGCAGAAGATGAGGGAAAGAATCTATTGGAGTACTTCATTTCATTGGAAAAAGAGAACCAACTTGTTGAAATTCTAGATGGGGTAGTAGCAAGAGAGGCAAAAATGGAGGATGTTAGTTATGTTGCAAAGTTAGCAATTGGATGTTTGAGATTGAATGGGAAAAGAAGGCCTACCATGAAACAAGTATTTTTGGAACTAGAAGGGTTGAGGAAGTCACAAGATTATGTAGATTTTGTTGAAGAAAATCAATCAAGTGGGAGTTTTGCTATTCCCAATGCAAGTACTAGCTATGAAGAGCTTACAGATGATGACATTGTATCTCTTGAAATTGAAACACTGTAA | 1254 | 38.04 | MEVRERNPNVGTGDVNFYFAHAVAYVCLLPGVGSVTAFLVMLLLVYKVYQLVKKRRHKFDKEKFFKQNGGSLLEKKLQGMEKKVKLFTKGELKRATDNYSHSRFLGQGGYGTVYKGNLRDGTIVAVKRSNQINKKWIEHFINEVIALSEINHRNVVKLFGCCLETKLPLLVYEFVPNRTLSDHIHKKGHEDSSPLSWEIRLRIASEVAGAIAYMHSAASVPIIHRDIKSSNILLDHNYNAKVSDFGTSRFVPNDQSHLTTKVQGTLGYIDPEYFRSSILTEKSDVYSFGVLMVELLTGKQPFSFAEDEGKNLLEYFISLEKENQLVEILDGVVAREAKMEDVSYVAKLAIGCLRLNGKRRPTMKQVFLELEGLRKSQDYVDFVEENQSSGSFAIPNASTSYEELTDDDIVSLEIETL | 417 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3913349 | 3921166 | - | Sed0028192.1 | Sed12g0658 | 731614 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0658 | 417 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 | 31 | 376 | IPR045274 | GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER) | |
Sed12g0658 | 417 | SUPERFAMILY | Protein kinase-like (PK-like) | 83 | 370 | IPR011009 | - | |
Sed12g0658 | 417 | CDD | STKc_IRAK | 105 | 373 | - | - | |
Sed12g0658 | 417 | ProSiteProfiles | Protein kinase domain profile. | 99 | 380 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g0658 | 417 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 222 | 234 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed12g0658 | 417 | FunFam | Wall-associated receptor kinase 2 | 71 | 174 | - | - | |
Sed12g0658 | 417 | Gene3D | Phosphorylase Kinase; domain 1 | 60 | 174 | - | - | |
Sed12g0658 | 417 | Pfam | Protein kinase domain | 99 | 366 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g0658 | 417 | SMART | serkin_6 | 99 | 380 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g0658 | 417 | Gene3D | Transferase(Phosphotransferase) domain 1 | 175 | 393 | - | - | |
Sed12g0658 | 417 | FunFam | Wall-associated receptor kinase 2 | 175 | 391 | - | - | |
Sed12g0658 | 417 | ProSitePatterns | Protein kinases ATP-binding region signature. | 105 | 127 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g2083 | Sed-Chr10:37283960 | Sed12g0658 | Sed-Chr12:3913349 | 4.50E-97 | dispersed | |
Sed12g0658 | Sed-Chr12:3913349 | Sed12g1954 | Sed-Chr12:30594098 | 4.30E-126 | dispersed | |
Sed12g0658 | Sed-Chr12:3913349 | Sed02g0586 | Sed-Chr2:43527057 | 1.10E-73 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79972 | PF00069 | Pkinase | 3.90E-51 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0658 | - | - | - | 0.0 |