Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0676 ATGAAATCCTTACTTTCTCCCATTTTCAAATTCCCCGCCATTATTTCTCCCAAATTCTTCTTCACCACCACCACCGCCGCCGTTTCCACCGCCATGTCCAGTTCCGATCACTCTCCCGCCGCCTTCGACCGACCTCGCTCCGTCATCAAGAAGATTCTCACTAAACTCCAGCACGAAGGAGATGGCGCCGTCGTCCGTCGAGGCATCGGAAGAAGCGATTTGAAGAATCTGGATCCATTTCTGATGCTTGATGAATTTTCAGTTAGTCCGCCGGCTGGATTCCCCGATCATCCTCATAGAGGTTTTGAGACTGTGACCTACATGTTACAGGGAGGAATTACCCATCAAGATTTTGCCGGCCACAAGGGTACAATCAGAACAGGGGATGTCCAGTGGATGACAGCAGGAAGAGGTATTATCCATTCTGAAATGCCTGCTGGTGAAGGATATCAAAAGGGTTTGCAACTTTGGATCAATCTTGCATCCCATGACAAAATGATGGAACCGAGGTATCAAGAGATTCCAAGCGACAACATTCCGAGAGCAGAGAAAGATGGTGTCGAAGTTCGCGTCATAGCAGGAGAGTCCATGGGAGTACACTCTCCAATCTACACACAAACTCCAACAATGTACCTCGACTTCACATTGAAACCAAGAGCTCAAATGCACCAACACATCCCGAACACGTGGACCGCTTTCGTGTACATTATCGACGGGGAAGGGGTGTTCGGGTCCTCGAATGCATCCCGGGTGGCGGCTCACCATGTACTCGTGTTAGGACAAGGAGATGGGCTGAGTGTGTGGAACAGATCTTCAAAGCCATTGAGGTTTGTTTTGATAGCAGGGAAGCCATTGAATGAACCAATTGTTCAATATGGACCATTTGTGATGAACTCACAATCTGAAATTGACCAAGCAATGGAGGACTACCACTATGGCAAAAATGGGTTTGAAATGGCTAAGTATTGGAGATCCCAGTGA 981 48.01 MKSLLSPIFKFPAIISPKFFFTTTTAAVSTAMSSSDHSPAAFDRPRSVIKKILTKLQHEGDGAVVRRGIGRSDLKNLDPFLMLDEFSVSPPAGFPDHPHRGFETVTYMLQGGITHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPAGEGYQKGLQLWINLASHDKMMEPRYQEIPSDNIPRAEKDGVEVRVIAGESMGVHSPIYTQTPTMYLDFTLKPRAQMHQHIPNTWTAFVYIIDGEGVFGSSNASRVAAHHVLVLGQGDGLSVWNRSSKPLRFVLIAGKPLNEPIVQYGPFVMNSQSEIDQAMEDYHYGKNGFEMAKYWRSQ 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4047754 4050561 + Sed0021464.1 Sed12g0676 731632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0676 326 PANTHER PIRIN-RELATED 33 326 IPR012093 -
Sed12g0676 326 Gene3D Jelly Rolls 180 285 IPR014710 -
Sed12g0676 326 SUPERFAMILY RmlC-like cupins 46 324 IPR011051 -
Sed12g0676 326 CDD cupin_pirin_C 208 284 - -
Sed12g0676 326 FunFam pirin 59 195 - -
Sed12g0676 326 Pfam Pirin C-terminal cupin domain 211 316 IPR008778 -
Sed12g0676 326 Gene3D Jelly Rolls 59 311 IPR014710 -
Sed12g0676 326 Pfam Pirin 65 158 IPR003829 -
Sed12g0676 326 CDD cupin_pirin_N 63 160 - -
Sed12g0676 326 PIRSF Pirin 44 324 IPR012093 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2718 Sed-Chr7:42384795 Sed12g0676 Sed-Chr12:4047754 9.80E-120 dispersed
Sed07g2719 Sed-Chr7:42384795 Sed12g0676 Sed-Chr12:4047754 7.10E-91 dispersed
Sed12g0676 Sed-Chr12:4047754 Sed02g1057 Sed-Chr2:47931084 5.00E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0676 K06911 - csv:101205861 597.816