Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0691 ATGGAGAAGGACAAACCCCAAATCCATTCTGGTGGGTTTCCTCCCCCTTCGAATCGTTACTCGACTCTTTCACCAGCTGCTAGCAGCTTCAATGGTAAATCTGATGCAGCTTTGTGTTCAATGTCGCTTCCTCCAATGTCCCCAAGTGTTAATTCTTCCGATTCGGGTCAGTTTATCCGTGATTCGAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCACCAAGAAATATTGGTCATAGACGTGCTCATTCAGAGATTTTGACCCTTCCTGATGATATTTGCTTTGACAGTGACCTTGGTGTCATTGGCAATGGTGATGGCCCTTCGTTTTCTGATGATACTGAGGAAGATTTGCTGTCCATGTACCTTGACATGGATAAGTTCAATTCTTCCACTGCTACCTCTGGTTTGCAATTTGGGGAGTCTTCTCCTTCTTCTGGTGTTGTGGAAGGGAGATTTAGTTCTAATTCAGCAATGGGAGCTGCAACTTCTATGGATGATGCTGCTGTTGGTTTGAGGGAGAAGCCAAGAGTTAGGCACCAGCATAGCCAGTCCATGGATGGTTTGACAAGCATCAAGCCTGAGATGCTTGTTTCAGGGTCTGATGAAGTTTCTGCAGCTGATTCCAAGAAAGCCTTATCAGCTTCAAAGCTTGCTGAGCTTGCACTCATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCGGCTGCTAGGTCGAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTACAAACAGAGGCGACTTCTTTATCTGCTCAATTAACCCTCTTACAGAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAACTAAAGCTGAGGTTGCAGACAACGGAGCAACAGGTTCACCTGCAAGATGCTCTAAATGAAGCACTGAAAGAGGAAATTCAACATTTGAAAATATTGACTGGCCAAACAACAACCCCAAATGGTGGATCAATGTTAAACTTTGCTTCCTTTGGCACTGGCCAACCATTTTACCCAAACAATCATCAAGCAATGCACACTTTGCTAACTGCTCAGCAGTTTCAGCAACTTCAAATCCATTCCCAGCAACAACAACAGCAACAGCAACATTTTCAGTACCATCAGCTGCATCAGCAATCGACCGGAGACATCAAAATGAAAGGATCGACTTCTTCTACGAGTCCAAAAGACAACACCACCTCAGATACGTCCTCTTCCGCTTAG 1251 45.0 MEKDKPQIHSGGFPPPSNRYSTLSPAASSFNGKSDAALCSMSLPPMSPSVNSSDSGQFIRDSNRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDICFDSDLGVIGNGDGPSFSDDTEEDLLSMYLDMDKFNSSTATSGLQFGESSPSSGVVEGRFSSNSAMGAATSMDDAAVGLREKPRVRHQHSQSMDGLTSIKPEMLVSGSDEVSAADSKKALSASKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTTEQQVHLQDALNEALKEEIQHLKILTGQTTTPNGGSMLNFASFGTGQPFYPNNHQAMHTLLTAQQFQQLQIHSQQQQQQQQHFQYHQLHQQSTGDIKMKGSTSSTSPKDNTTSDTSSSA 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4124522 4128901 + Sed0013754.1 Sed12g0691 731647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0691 416 Pfam bZIP transcription factor 230 284 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0691 416 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 66 394 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed12g0691 416 CDD bZIP_plant_RF2 231 280 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0691 416 SMART brlzneu 226 290 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0691 416 Coils Coil 246 315 - -
Sed12g0691 416 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 228 291 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0691 416 MobiDBLite consensus disorder prediction 14 29 - -
Sed12g0691 416 MobiDBLite consensus disorder prediction 1 29 - -
Sed12g0691 416 MobiDBLite consensus disorder prediction 370 416 - -
Sed12g0691 416 Gene3D - 229 282 - -
Sed12g0691 416 FunFam probable transcription factor PosF21 229 282 - -
Sed12g0691 416 SUPERFAMILY Leucine zipper domain 230 281 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1345 Sed-Chr11:29504717 Sed12g0691 Sed-Chr12:4124522 3.30E-38 dispersed
Sed12g0691 Sed-Chr12:4124522 Sed12g0695 Sed-Chr12:4156507 1.10E-158 dispersed
Sed12g0691 Sed-Chr12:4124522 Sed12g0694 Sed-Chr12:4156507 1.10E-158 proximal
Sed12g0691 Sed-Chr12:4124522 Sed02g1063 Sed-Chr2:48043232 5.90E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40125 PF00170 bZIP_1 1.00E-08 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0691 - - - 0.0