Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0692 ATGCCTCAATATCGTTCAATATTCTCCAAATTCAATTCTTCTAAGAAACCCATTTCATCTTCTACATCATCTTCTTTCCTGCGCGCCAGTGCTTCAATTTCTCGTCCTCATTTCTCTTCTTTGATACCCGATTTCACCCAAAAACAATCGAAGGAGCCAAATTCTTCAATTTTTGAATCTGGGTTTTCATCACATTGTCGTCGACATCGACACAGTAATATTAATCCCGTTTTCACAACTGGGAATTGGCTGAAATGCTCTAATTTGAGAAGATTCAGAAGAAGCACAAGAGGATTTTGCAGTGAGCCGGAACGAGAATCTATTGAATATGATGTTGTTATCATTGGAGCTGGACCTGCTGGGCTATCTGCGGCGATTCGGTTGAAGCAAATGTGTCGAGATAAGGGTGTGGATTTATCGGTTTGTGTGGTGGAGAAAGGCGCTGAAGTTGGCGCTCACATCCTCTCTGGAAATGTTTTTGAACCCCGAGCATTGGATGAATTAATCCCCACATGGAAGGAGGATGAGGCACCAATTAGTGTCCCTGTAACTTCTGATAAGTTTTGCTTTCTAACAAAAAGTCGTGCTTTTTCACTTCCTAGCCCCTTCAATAATGAAGGAAACTATGTGATAAGTTTAAGTCAGTTAATTCGTTGGATGGGAATGAAAGCTGAAGAGTTGGGAGTAGAGATATATCCAGGATTTGGTGCTAGTGAAGTATTATATGATAAAGCAGATACAGTTGTTGGCATTCGAACTAATGACATGGGAGTAGCAAAAGATGGCTCAAAGAAGGATAACTTTCAACTTGGTGTAGAATTGAAAGGGCGCATTACGCTTCTGGCTGAGGGATGTCGAGGATCATTATCAGAGAAATTAATTAAAAAATACAGTCTAAGGCAGAAAGTGAACGCTCAGCATCAGACATATGCTTTGGGAATTAAAGAGGTGTGGGAAATAAACGAGGACAAACATAATCCAGGAGCAGTGCTTCATACTTTGGGTTGGCCCTTGAATCAGAAGACGTATGGGGGCTCATTTCTGTACCACATGAAGGATAGACAGATTTCTATTGGCCTTGTAGTTGCTTTAAATTACCAGAATCCTTTCTTGAATCCTTACGAAGAATTTCAGAAATTAAAACATCATCCTGTCATCAAAGAACTTCTAGAAGGTGGGACAGTTGTCCAATACGGGGCTCGCACGTTAAATGAAGGCGGTTTTCAGTCTATTCCATATCCAGTTTTTCCTGGAGGAGCAATTATTGGATGTTCAGCTGGCTTTTTAAATGTACCAAAGATCAAGGGAACACACACTGCAATGAAGTCAGGAATGCTGGCAGCTGAGGCTGCATTTGGCACACTTCATGGAGGCTTAAAAATGGAAGCGTATTGGGATAATTTGCGAGATTCATGGATATGGGAAGAACTATATCGAGCTCGGAACTATAGACCTGCATTTGAGCATGGTCTTGTTCCGGGCTTGACCATAAGTGCGCTGGAGCACTATGTACTTAAAGGAAGGTCTCCTCTTACACTAAAGCATGGAAAACCTGACCATGAAGCCACAAATGTTGCAAGTTTACACACTCCAATTGATTATCCGAAGCATGATAGTCTTCTCTCATTTGATGTGCCGACCTCGCTACACAGGAGCAACACAAATCATGACCATGATCAGCCAGCTCACCTTCAGTTAAGGAACCCTAAGATTCCGGAGGAAGTAAATTTGAAAGAATATGCCGCACCGGAGTCGAGATATTGTCCTGCACGTGTATACGAGTACATACCAGATGAGAACAACCAGATGAAATTGCAGATTAATGCTCAAAATTGTCTTCATTGCAAGGCTTGTGATATCAAAGATCCAAAGCAGAACATAGAGTGGAGCGTCCCGGAAGGCGGTGGCGGTCCGGGCTACTCCGTCATGTAA 1932 42.29 MPQYRSIFSKFNSSKKPISSSTSSSFLRASASISRPHFSSLIPDFTQKQSKEPNSSIFESGFSSHCRRHRHSNINPVFTTGNWLKCSNLRRFRRSTRGFCSEPERESIEYDVVIIGAGPAGLSAAIRLKQMCRDKGVDLSVCVVEKGAEVGAHILSGNVFEPRALDELIPTWKEDEAPISVPVTSDKFCFLTKSRAFSLPSPFNNEGNYVISLSQLIRWMGMKAEELGVEIYPGFGASEVLYDKADTVVGIRTNDMGVAKDGSKKDNFQLGVELKGRITLLAEGCRGSLSEKLIKKYSLRQKVNAQHQTYALGIKEVWEINEDKHNPGAVLHTLGWPLNQKTYGGSFLYHMKDRQISIGLVVALNYQNPFLNPYEEFQKLKHHPVIKELLEGGTVVQYGARTLNEGGFQSIPYPVFPGGAIIGCSAGFLNVPKIKGTHTAMKSGMLAAEAAFGTLHGGLKMEAYWDNLRDSWIWEELYRARNYRPAFEHGLVPGLTISALEHYVLKGRSPLTLKHGKPDHEATNVASLHTPIDYPKHDSLLSFDVPTSLHRSNTNHDHDQPAHLQLRNPKIPEEVNLKEYAAPESRYCPARVYEYIPDENNQMKLQINAQNCLHCKACDIKDPKQNIEWSVPEGGGGPGYSVM 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4130370 4146267 - Sed0000993.1 Sed12g0692 731648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0692 643 Pfam Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 541 641 IPR007859 GO:0051536(InterPro)
Sed12g0692 643 Gene3D - 109 480 IPR036188 -
Sed12g0692 643 Pfam ETF-QO, ubiquinone-binding 310 403 IPR049398 -
Sed12g0692 643 SUPERFAMILY FAD-linked reductases, C-terminal domain 309 405 - -
Sed12g0692 643 Gene3D - 544 638 - -
Sed12g0692 643 PANTHER ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE 95 643 IPR040156 GO:0004174(PANTHER)|GO:0004174(InterPro)|GO:0022900(InterPro)|GO:0022900(PANTHER)|GO:0031305(PANTHER)
Sed12g0692 643 Pfam NAD(P)-binding Rossmann-like domain 114 159 - -
Sed12g0692 643 Gene3D - 181 543 - -
Sed12g0692 643 FunFam Electron transfer flavoprotein-ubiquinone oxidoreductase 544 638 - -
Sed12g0692 643 SUPERFAMILY FAD/NAD(P)-binding domain 104 539 IPR036188 -
Sed12g0692 643 SUPERFAMILY 4Fe-4S ferredoxins 543 642 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0692 K00311 - - csv:101211771 1099.35
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1268 Blo01g00193 . . Bda08g00158 . . . Bma05g01166 . . . Cma14g01519 . Car14g01343 Sed12g0692 . Cpe03g01278 Bhi01g01188 Tan10g1201 Cmetu06g1782 . Hepe05g1300 . Lcy11g1259 . . . . . . . . . Cone18ag0851 . . . . . . . . Bda13g00549 Bpe05g00974 . . . . . Cmo14g01554 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012450 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29