Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0694 ATGGAGAAGGACAGACCCGAGAGCGATTCTGGTGGATTTCTACCCCCATCGAGTCGTTACGGAGGTCTTTCACCATCTGGAAGTAGTTTCAATGCAAAATCAGAGGCAACATCGGCTTCAATGTCGCTTCCTCCCATGGCTCCTGGTGCTCATTCCGATTCGAGTCAATTCGGGCGTGGATTGTCCACTGATTCTAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCTCCGAGAAATATCGGTCACAGACGTGCTCATTCGGAAATAGTGACCCTTCCTGATGATATTTGTTTCGACAGTGACCTTGGGGTCATTGGCAATTCTGATGGCCCTTCATTTTCTGATGATATCGAGGAAGATTTGTTGTCCATGTACCTTGACATGGACAAGTTCAATTCTTCCACTGCTAGCTCTTCTGCTGCTGGTGTAGAAGCAATATCAACTCCTGATTCAGCAATTGAAGCTGCAACTTCTAAGGATGATGCTGTTGTTGGTTTGAAGGAGAGGTCGAGAGTTAGACACCAGCAAAGTCAGTCCATGGATGGCTTAAATAACATAGAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAATTCTCTCCTGCGGATTCTAAGAAAGCAATGTCCGCTACAAAACTTGCCGAGCTTGCACTAACGGACCCCAAACGTGCAAAGAGGATATGGGCAAACAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTTCTGAGCTCGAACGGAAAGTTCAAACTCTGCAAGCAGATGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGGGACACAAACGGATATACTGCTGAGAACAGTGAACTAAAGCTGCGTTTGCAGACAATTGAGCAGCAGGTTCACATGCAAGATGCTCTAAATGAATCACTCAAAGAGGAAATTCAGCATTTAAAAGTATTGACTGGCCAATCAATCCCAAATGGTGGTTCAATGACAAACTTTGCTTCCTTTGGAGCTGGCCAACAATTTTACCCAAACAATCAAGCTATGCACACTTTGTTAACTGCTAAGCAGTTTCAGCAACTTCAAATCCACTCACAACAACAACATCACCATTTTCAATACCACCAGAGGCATCAGCTTCAGCAACAACCAACTGGAGATATCAAAATGAAAGGGTCGACTTCTTCTCCGAGTCCAAACGACAGCAACGCATCAGATACGTCCTCTCCCGCTTGTTGA 1230 45.2 MEKDRPESDSGGFLPPSSRYGGLSPSGSSFNAKSEATSASMSLPPMAPGAHSDSSQFGRGLSTDSNRFSHDISRMPDNPPRNIGHRRAHSEIVTLPDDICFDSDLGVIGNSDGPSFSDDIEEDLLSMYLDMDKFNSSTASSSAAGVEAISTPDSAIEAATSKDDAVVGLKERSRVRHQQSQSMDGLNNIEPEMLVSGSEEFSPADSKKAMSATKLAELALTDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQADATSLSAQLTLLQRDTNGYTAENSELKLRLQTIEQQVHMQDALNESLKEEIQHLKVLTGQSIPNGGSMTNFASFGAGQQFYPNNQAMHTLLTAKQFQQLQIHSQQQHHHFQYHQRHQLQQQPTGDIKMKGSTSSPSPNDSNASDTSSPAC 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4156507 4161140 + Sed0026015.1 Sed12g0694 731650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0694 409 MobiDBLite consensus disorder prediction 1 85 - -
Sed12g0694 409 SUPERFAMILY Leucine zipper domain 224 274 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0694 409 CDD bZIP_plant_RF2 225 274 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0694 409 MobiDBLite consensus disorder prediction 361 409 - -
Sed12g0694 409 MobiDBLite consensus disorder prediction 55 69 - -
Sed12g0694 409 Pfam bZIP transcription factor 224 272 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0694 409 MobiDBLite consensus disorder prediction 21 41 - -
Sed12g0694 409 Gene3D - 223 275 - -
Sed12g0694 409 MobiDBLite consensus disorder prediction 374 409 - -
Sed12g0694 409 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 222 285 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0694 409 Coils Coil 240 274 - -
Sed12g0694 409 Coils Coil 289 309 - -
Sed12g0694 409 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 382 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Sed12g0694 409 SMART brlzneu 220 284 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g0694 409 FunFam probable transcription factor PosF21 223 276 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1063 Sed-Chr2:48043232 Sed12g0694 Sed-Chr12:4156507 3.00E-167 dispersed
Sed05g2538 Sed-Chr5:37388305 Sed12g0694 Sed-Chr12:4156507 7.50E-08 dispersed
Sed12g0691 Sed-Chr12:4124522 Sed12g0694 Sed-Chr12:4156507 1.10E-158 proximal
Sed12g0694 Sed-Chr12:4156507 Sed12g0695 Sed-Chr12:4156507 1.00E-220 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40126 PF00170 bZIP_1 2.00E-08 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0694 - - - 0.0