Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0694 | ATGGAGAAGGACAGACCCGAGAGCGATTCTGGTGGATTTCTACCCCCATCGAGTCGTTACGGAGGTCTTTCACCATCTGGAAGTAGTTTCAATGCAAAATCAGAGGCAACATCGGCTTCAATGTCGCTTCCTCCCATGGCTCCTGGTGCTCATTCCGATTCGAGTCAATTCGGGCGTGGATTGTCCACTGATTCTAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCTCCGAGAAATATCGGTCACAGACGTGCTCATTCGGAAATAGTGACCCTTCCTGATGATATTTGTTTCGACAGTGACCTTGGGGTCATTGGCAATTCTGATGGCCCTTCATTTTCTGATGATATCGAGGAAGATTTGTTGTCCATGTACCTTGACATGGACAAGTTCAATTCTTCCACTGCTAGCTCTTCTGCTGCTGGTGTAGAAGCAATATCAACTCCTGATTCAGCAATTGAAGCTGCAACTTCTAAGGATGATGCTGTTGTTGGTTTGAAGGAGAGGTCGAGAGTTAGACACCAGCAAAGTCAGTCCATGGATGGCTTAAATAACATAGAGCCTGAGATGCTTGTCTCAGGGTCTGAAGAATTCTCTCCTGCGGATTCTAAGAAAGCAATGTCCGCTACAAAACTTGCCGAGCTTGCACTAACGGACCCCAAACGTGCAAAGAGGATATGGGCAAACAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTTCTGAGCTCGAACGGAAAGTTCAAACTCTGCAAGCAGATGCAACTTCTTTATCTGCTCAGTTAACCCTCTTACAGAGGGACACAAACGGATATACTGCTGAGAACAGTGAACTAAAGCTGCGTTTGCAGACAATTGAGCAGCAGGTTCACATGCAAGATGCTCTAAATGAATCACTCAAAGAGGAAATTCAGCATTTAAAAGTATTGACTGGCCAATCAATCCCAAATGGTGGTTCAATGACAAACTTTGCTTCCTTTGGAGCTGGCCAACAATTTTACCCAAACAATCAAGCTATGCACACTTTGTTAACTGCTAAGCAGTTTCAGCAACTTCAAATCCACTCACAACAACAACATCACCATTTTCAATACCACCAGAGGCATCAGCTTCAGCAACAACCAACTGGAGATATCAAAATGAAAGGGTCGACTTCTTCTCCGAGTCCAAACGACAGCAACGCATCAGATACGTCCTCTCCCGCTTGTTGA | 1230 | 45.2 | MEKDRPESDSGGFLPPSSRYGGLSPSGSSFNAKSEATSASMSLPPMAPGAHSDSSQFGRGLSTDSNRFSHDISRMPDNPPRNIGHRRAHSEIVTLPDDICFDSDLGVIGNSDGPSFSDDIEEDLLSMYLDMDKFNSSTASSSAAGVEAISTPDSAIEAATSKDDAVVGLKERSRVRHQQSQSMDGLNNIEPEMLVSGSEEFSPADSKKAMSATKLAELALTDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQADATSLSAQLTLLQRDTNGYTAENSELKLRLQTIEQQVHMQDALNESLKEEIQHLKVLTGQSIPNGGSMTNFASFGAGQQFYPNNQAMHTLLTAKQFQQLQIHSQQQHHHFQYHQRHQLQQQPTGDIKMKGSTSSPSPNDSNASDTSSPAC | 409 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4156507 | 4161140 | + | Sed0026015.1 | Sed12g0694 | 731650 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0694 | 409 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
Sed12g0694 | 409 | SUPERFAMILY | Leucine zipper domain | 224 | 274 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g0694 | 409 | CDD | bZIP_plant_RF2 | 225 | 274 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g0694 | 409 | MobiDBLite | consensus disorder prediction | 361 | 409 | - | - | |
Sed12g0694 | 409 | MobiDBLite | consensus disorder prediction | 55 | 69 | - | - | |
Sed12g0694 | 409 | Pfam | bZIP transcription factor | 224 | 272 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g0694 | 409 | MobiDBLite | consensus disorder prediction | 21 | 41 | - | - | |
Sed12g0694 | 409 | Gene3D | - | 223 | 275 | - | - | |
Sed12g0694 | 409 | MobiDBLite | consensus disorder prediction | 374 | 409 | - | - | |
Sed12g0694 | 409 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 222 | 285 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g0694 | 409 | Coils | Coil | 240 | 274 | - | - | |
Sed12g0694 | 409 | Coils | Coil | 289 | 309 | - | - | |
Sed12g0694 | 409 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 69 | 382 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Sed12g0694 | 409 | SMART | brlzneu | 220 | 284 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed12g0694 | 409 | FunFam | probable transcription factor PosF21 | 223 | 276 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g1063 | Sed-Chr2:48043232 | Sed12g0694 | Sed-Chr12:4156507 | 3.00E-167 | dispersed | |
Sed05g2538 | Sed-Chr5:37388305 | Sed12g0694 | Sed-Chr12:4156507 | 7.50E-08 | dispersed | |
Sed12g0691 | Sed-Chr12:4124522 | Sed12g0694 | Sed-Chr12:4156507 | 1.10E-158 | proximal | |
Sed12g0694 | Sed-Chr12:4156507 | Sed12g0695 | Sed-Chr12:4156507 | 1.00E-220 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40126 | PF00170 | bZIP_1 | 2.00E-08 | CL0018 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0694 | - | - | - | 0.0 |