Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0702 ATGGAGAAGGAGCTGTTCATGAACGATGGATGCAGTTTTTATGGGATGGAAATTGAACCCAATGAGCTGAATTCGAGTTTGATGTTTAATCCCAACTGGGAAAATTCTATGGATCAGAGCGAGTTTTTCGATTCCACTATGAGCTCGATTGTGTCTTCTCCGGTGAACTCCCACGCCGGAGCTTTCATCGGCGGCGGCGGCGGCGAGAACTTGATGATGCGGGAGTTGATCGGAAGGCTAGGGAGCATTTGCAATTCCGGTGAGATTTCGAATCATTCTTACATTACTGGAACGAACAATAACAGTACAAATACGTCTTGTTACAATACGCCTTTGAATTCGCCGCCGAAGCTCAATTTGTCGTCGATTATGGAGTCTCAGATGAGAGGGGATTTATCTGTCGGCGGTGGAAATTTGATTCCTCATCATCAAAATCTGGCCCCATTTTCGGCTGATCCAGGTTTTGCTGAGAGAGCTGCGAGATTTTCTTGCTTTGGGAATATGAATTTGAATGGGCAATTGGGTTGTAATGAAACTCAAGAATTGGGTAACAAATCAATGGAATCTGGAAAGCTTTCAAGAGTTTGTAGCAATAAATCCTTCAATGTTGCTGGAATTGGATCTCAAATGGGGGTTCAGGAAGGCAAGGGAAATTCAATGGCTAATAAGAAAGAACTGAACAGGTTTTCGAGGTCTTCAACCCCCGAAAATGCCGGGGATTCACAGGCGGGATCTTCGGTTTCGGAGTTGGGATCTAAAGGTAAAGCTGAAGTCAACACTAGGAAAAGGAAATCAGCTCACACTGGAGAGGCAAAGGATGTGAAGGCTGCAACAAAGAACAATGATTCAAATGGAAAGAAAATCAAATCAGAGGAAGATTCTAAGAAAGAGATTGATGCTGCAAAGGGGAAAGCAGAGGCAAAAGATGACACAAAAGCTTCAGGGGATGCAAATCAGAAGCAAAAGAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTATATTCATGTTAGAGCTAGAAGGGGTCAAGCTACAGATAGCCATAGTTTGGCTGAAAGAGTCCGACGAGAAAAAATCAGCAAACGGATGAATTTTCTTCAAGATCTTGTTCCCGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATCATAAACTATGTTCAGTCTTTGCAACGCCAAGTCGAGTTTCTTTCAATGAAACTGACAACTATTAATCCAAGGATGGATTTTAACATGGAGACCCTTTTGCCAAAGGATATCTTCAAAGGTCCCGGTTCGTCACCGCATGCAATTTACCCTAGGGATTCATCTGTTCCCTCATTTGCATATGAATATCAGTCTATGCACATGCCTCCTCTTCATGGTGGTATTTCTAATGGGGCAGAGAAGCAGTTCCCCATAGCCTCAGCAAGTGATATGATGCAAAGAAATCTAAGCGGGCAAATGCCGAGGGGGTACAGCGAAGTCGGAAGTGGAAGCCAAATTTCAAAGTTATGGGAGGATGAACTCCACAATGTAGTTCAAATGGGGTATGGACAAAACCAGCTGCAGAATCCTAATGGATCCATGGCTGGAAATGAGATGAAAAGTGAATTGTAA 1611 43.39 MEKELFMNDGCSFYGMEIEPNELNSSLMFNPNWENSMDQSEFFDSTMSSIVSSPVNSHAGAFIGGGGGENLMMRELIGRLGSICNSGEISNHSYITGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQMRGDLSVGGGNLIPHHQNLAPFSADPGFAERAARFSCFGNMNLNGQLGCNETQELGNKSMESGKLSRVCSNKSFNVAGIGSQMGVQEGKGNSMANKKELNRFSRSSTPENAGDSQAGSSVSELGSKGKAEVNTRKRKSAHTGEAKDVKAATKNNDSNGKKIKSEEDSKKEIDAAKGKAEAKDDTKASGDANQKQKNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMNFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLTTINPRMDFNMETLLPKDIFKGPGSSPHAIYPRDSSVPSFAYEYQSMHMPPLHGGISNGAEKQFPIASASDMMQRNLSGQMPRGYSEVGSGSQISKLWEDELHNVVQMGYGQNQLQNPNGSMAGNEMKSEL 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4204407 4207503 + Sed0019023.1 Sed12g0702 731658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0702 536 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 394 IPR011598 GO:0046983(InterPro)
Sed12g0702 536 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 147 494 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed12g0702 536 SMART finulus 350 400 IPR011598 GO:0046983(InterPro)
Sed12g0702 536 Gene3D - 341 414 IPR036638 GO:0046983(InterPro)
Sed12g0702 536 MobiDBLite consensus disorder prediction 229 253 - -
Sed12g0702 536 FunFam Basic helix-loop-helix transcription factor 341 414 - -
Sed12g0702 536 MobiDBLite consensus disorder prediction 229 335 - -
Sed12g0702 536 CDD bHLH_AtBPE_like 334 419 - -
Sed12g0702 536 MobiDBLite consensus disorder prediction 517 536 - -
Sed12g0702 536 Pfam Helix-loop-helix DNA-binding domain 348 395 IPR011598 GO:0046983(InterPro)
Sed12g0702 536 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 414 IPR036638 GO:0046983(InterPro)
Sed12g0702 536 MobiDBLite consensus disorder prediction 255 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1070 Sed-Chr2:48067959 Sed12g0702 Sed-Chr12:4204407 2.10E-221 dispersed
Sed02g1071 Sed-Chr2:48067959 Sed12g0702 Sed-Chr12:4204407 1.90E-205 dispersed
Sed08g0184 Sed-Chr8:1019787 Sed12g0702 Sed-Chr12:4204407 2.90E-38 dispersed
Sed09g0995 Sed-Chr9:32673742 Sed12g0702 Sed-Chr12:4204407 9.30E-60 dispersed
Sed11g1528 Sed-Chr11:30857573 Sed12g0702 Sed-Chr12:4204407 6.30E-45 dispersed
Sed12g0702 Sed-Chr12:4204407 Sed13g1831 Sed-Chr13:23247158 4.00E-39 dispersed
Sed12g0702 Sed-Chr12:4204407 Sed12g0703 Sed-Chr12:4204407 2.10E-234 tandem
Sed12g0702 Sed-Chr12:4204407 Sed02g1067 Sed-Chr2:48067959 1.80E-217 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40128 PF00010 HLH 9.70E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0702 - - - 0.0