Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0703 ATGGAGAAGGAGCTGTTCATGAACGATGGATGCAGTTTTTATGGGATGGAAATTGAACCCAATGAGCTGAATTCGAGTTTGATGTTTAATCCCAACTGGGAAAATTCTATGGATCAGAGCGAGTTTTTCGATTCCACTATGAGCTCGATTGTGTCTTCTCCGGTGAACTCCCACGCCGGAGCTTTCATCGGCGGCGGCGGCGGCGAGAACTTGATGATGCGGGAGTTGATCGGAAGGCTAGGGAGCATTTGCAATTCCGGTGAGATTTCGAATCATTCTTACATTACTGGAACGAACAATAACAGTACAAATACGTCTTGTTACAATACGCCTTTGAATTCGCCGCCGAAGCTCAATTTGTCGTCGATTATGGAGTCTCAGATGAGAGGGGATTTATCTGTCGGCGGTGGAAATTTGATTCCTCATCATCAAAATCTGGCCCCATTTTCGGCTGATCCAGGTTTTGCTGAGAGAGCTGCGAGATTTTCTTGCTTTGGGAATATGAATTTGAATGGGCAATTGGGTTGTAATGAAACTCAAGAATTGGGTAACAAATCAATGGAATCTGGAAAGCTTTCAAGAGTTTGTAGCAATAAATCCTTCAATGTTGCTGGAATTGGATCTCAAATGGGGGTTCAGGAAGGCAAGGGAAATTCAATGGCTAATAAGAAAGAACTGAACAGGTTTTCGAGGTCTTCAACCCCCGAAAATGCCGGGGATTCACAGGCGGGATCTTCGGTTTCGGAGTTGGGATCTAAAGGTAAAGCTGAAGTCAACACTAGGAAAAGGAAATCAGCTCACACTGGAGAGGCAAAGGATGTGAAGGCTGCAACAAAGAACAATGATTCAAATGGAAAGAAAATCAAATCAGAGGAAGATTCTAAGAAAGAGATTGATGCTGCAAAGGGGAAAGCAGAGGCAAAAGATGACACAAAAGCTTCAGGGGATGCAAATCAGAAGCAAAAGAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTATATTCATGTTAGAGCTAGAAGGGGTCAAGCTACAGATAGCCATAGTTTGGCTGAAAGAGTCCGACGAGAAAAAATCAGCAAACGGATGAATTTTCTTCAAGATCTTGTTCCCGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATCATAAACTATGTTCAGTCTTTGCAACGCCAAGTCGAGTTTCTTTCAATGAAACTGACAACTATTAATCCAAGGATGGATTTTAACATGGAGACCCTTTTGCCAAAGGATGTAAGTGAAAAACAGAGCATCTTTTACTTCTTAATTTAG 1308 42.51 MEKELFMNDGCSFYGMEIEPNELNSSLMFNPNWENSMDQSEFFDSTMSSIVSSPVNSHAGAFIGGGGGENLMMRELIGRLGSICNSGEISNHSYITGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQMRGDLSVGGGNLIPHHQNLAPFSADPGFAERAARFSCFGNMNLNGQLGCNETQELGNKSMESGKLSRVCSNKSFNVAGIGSQMGVQEGKGNSMANKKELNRFSRSSTPENAGDSQAGSSVSELGSKGKAEVNTRKRKSAHTGEAKDVKAATKNNDSNGKKIKSEEDSKKEIDAAKGKAEAKDDTKASGDANQKQKNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMNFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLTTINPRMDFNMETLLPKDVSEKQSIFYFLI 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4204407 4207503 + Sed0019023.2 Sed12g0703 731659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0703 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 394 IPR011598 GO:0046983(InterPro)
Sed12g0703 435 SMART finulus 350 400 IPR011598 GO:0046983(InterPro)
Sed12g0703 435 Gene3D - 341 414 IPR036638 GO:0046983(InterPro)
Sed12g0703 435 MobiDBLite consensus disorder prediction 229 253 - -
Sed12g0703 435 Pfam Helix-loop-helix DNA-binding domain 348 395 IPR011598 GO:0046983(InterPro)
Sed12g0703 435 FunFam Basic helix-loop-helix transcription factor 341 414 - -
Sed12g0703 435 MobiDBLite consensus disorder prediction 229 335 - -
Sed12g0703 435 CDD bHLH_AtBPE_like 334 419 - -
Sed12g0703 435 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 147 421 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed12g0703 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 414 IPR036638 GO:0046983(InterPro)
Sed12g0703 435 MobiDBLite consensus disorder prediction 255 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2182 Sed-Chr8:35745054 Sed12g0703 Sed-Chr12:4204407 1.40E-29 dispersed
Sed09g0996 Sed-Chr9:32673742 Sed12g0703 Sed-Chr12:4204407 2.30E-50 dispersed
Sed12g0703 Sed-Chr12:4204407 Sed13g1831 Sed-Chr13:23247158 7.40E-36 dispersed
Sed12g0702 Sed-Chr12:4204407 Sed12g0703 Sed-Chr12:4204407 2.10E-234 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40129 PF00010 HLH 7.30E-06 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0703 - - - 0.0