Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g0703 | ATGGAGAAGGAGCTGTTCATGAACGATGGATGCAGTTTTTATGGGATGGAAATTGAACCCAATGAGCTGAATTCGAGTTTGATGTTTAATCCCAACTGGGAAAATTCTATGGATCAGAGCGAGTTTTTCGATTCCACTATGAGCTCGATTGTGTCTTCTCCGGTGAACTCCCACGCCGGAGCTTTCATCGGCGGCGGCGGCGGCGAGAACTTGATGATGCGGGAGTTGATCGGAAGGCTAGGGAGCATTTGCAATTCCGGTGAGATTTCGAATCATTCTTACATTACTGGAACGAACAATAACAGTACAAATACGTCTTGTTACAATACGCCTTTGAATTCGCCGCCGAAGCTCAATTTGTCGTCGATTATGGAGTCTCAGATGAGAGGGGATTTATCTGTCGGCGGTGGAAATTTGATTCCTCATCATCAAAATCTGGCCCCATTTTCGGCTGATCCAGGTTTTGCTGAGAGAGCTGCGAGATTTTCTTGCTTTGGGAATATGAATTTGAATGGGCAATTGGGTTGTAATGAAACTCAAGAATTGGGTAACAAATCAATGGAATCTGGAAAGCTTTCAAGAGTTTGTAGCAATAAATCCTTCAATGTTGCTGGAATTGGATCTCAAATGGGGGTTCAGGAAGGCAAGGGAAATTCAATGGCTAATAAGAAAGAACTGAACAGGTTTTCGAGGTCTTCAACCCCCGAAAATGCCGGGGATTCACAGGCGGGATCTTCGGTTTCGGAGTTGGGATCTAAAGGTAAAGCTGAAGTCAACACTAGGAAAAGGAAATCAGCTCACACTGGAGAGGCAAAGGATGTGAAGGCTGCAACAAAGAACAATGATTCAAATGGAAAGAAAATCAAATCAGAGGAAGATTCTAAGAAAGAGATTGATGCTGCAAAGGGGAAAGCAGAGGCAAAAGATGACACAAAAGCTTCAGGGGATGCAAATCAGAAGCAAAAGAATGATAATTCAAAGCCTCCAGAGCCTCCAAAGGATTATATTCATGTTAGAGCTAGAAGGGGTCAAGCTACAGATAGCCATAGTTTGGCTGAAAGAGTCCGACGAGAAAAAATCAGCAAACGGATGAATTTTCTTCAAGATCTTGTTCCCGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATCATAAACTATGTTCAGTCTTTGCAACGCCAAGTCGAGTTTCTTTCAATGAAACTGACAACTATTAATCCAAGGATGGATTTTAACATGGAGACCCTTTTGCCAAAGGATGTAAGTGAAAAACAGAGCATCTTTTACTTCTTAATTTAG | 1308 | 42.51 | MEKELFMNDGCSFYGMEIEPNELNSSLMFNPNWENSMDQSEFFDSTMSSIVSSPVNSHAGAFIGGGGGENLMMRELIGRLGSICNSGEISNHSYITGTNNNSTNTSCYNTPLNSPPKLNLSSIMESQMRGDLSVGGGNLIPHHQNLAPFSADPGFAERAARFSCFGNMNLNGQLGCNETQELGNKSMESGKLSRVCSNKSFNVAGIGSQMGVQEGKGNSMANKKELNRFSRSSTPENAGDSQAGSSVSELGSKGKAEVNTRKRKSAHTGEAKDVKAATKNNDSNGKKIKSEEDSKKEIDAAKGKAEAKDDTKASGDANQKQKNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMNFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLTTINPRMDFNMETLLPKDVSEKQSIFYFLI | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 4204407 | 4207503 | + | Sed0019023.2 | Sed12g0703 | 731659 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g0703 | 435 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 344 | 394 | IPR011598 | GO:0046983(InterPro) | |
Sed12g0703 | 435 | SMART | finulus | 350 | 400 | IPR011598 | GO:0046983(InterPro) | |
Sed12g0703 | 435 | Gene3D | - | 341 | 414 | IPR036638 | GO:0046983(InterPro) | |
Sed12g0703 | 435 | MobiDBLite | consensus disorder prediction | 229 | 253 | - | - | |
Sed12g0703 | 435 | Pfam | Helix-loop-helix DNA-binding domain | 348 | 395 | IPR011598 | GO:0046983(InterPro) | |
Sed12g0703 | 435 | FunFam | Basic helix-loop-helix transcription factor | 341 | 414 | - | - | |
Sed12g0703 | 435 | MobiDBLite | consensus disorder prediction | 229 | 335 | - | - | |
Sed12g0703 | 435 | CDD | bHLH_AtBPE_like | 334 | 419 | - | - | |
Sed12g0703 | 435 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 147 | 421 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Sed12g0703 | 435 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 342 | 414 | IPR036638 | GO:0046983(InterPro) | |
Sed12g0703 | 435 | MobiDBLite | consensus disorder prediction | 255 | 317 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2182 | Sed-Chr8:35745054 | Sed12g0703 | Sed-Chr12:4204407 | 1.40E-29 | dispersed | |
Sed09g0996 | Sed-Chr9:32673742 | Sed12g0703 | Sed-Chr12:4204407 | 2.30E-50 | dispersed | |
Sed12g0703 | Sed-Chr12:4204407 | Sed13g1831 | Sed-Chr13:23247158 | 7.40E-36 | dispersed | |
Sed12g0702 | Sed-Chr12:4204407 | Sed12g0703 | Sed-Chr12:4204407 | 2.10E-234 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40129 | PF00010 | HLH | 7.30E-06 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g0703 | - | - | - | 0.0 |