Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0728 ATGAGAATTGGGAAGTATGATTTGGGGAAAACTCTTGGAGAGGGCAATTTCGGCAAAGTGAAACTGGCCGCCGACCACCGCTCCGGCCGCCGGTTCGCCGTCAAGATCCTCGACAAGACCAAGATTCTCCATCTCAACTTCTCCGATCAGATTAAGCGTGAAATAAGTACTCTCAAGCGGCTTAGACATCCGAATGTTGTTAGACTTTATGAGGTTTTAGCCAGTAAGACGAAGATTTATATGGTTATGGAATGTGCCACCGGTGGCGAATTGTTTGATAGAATCGAATCGAATGGTAAGGTGGACGAAGCGGAAGGACGGAGACTATTCCAGCAGCTTATTGATGGTCTAAGCTATTGCCATGATAAAGGAGTTTACCACAGGGATCTCAAGCTTGAAAACGTGCTTGTTGATGCTAAGGGAAACATTAAGATCTCTGATTTTGGCCTCAGCGCTTTACCGCAGAATTGCAGGGAAGATGGTTTGCTGCACACTACCTGTGGAAGTCCCAACTATGTTGCACCAGAAGTACTTGCTAATAGAGGATACAATGGAGCTGCCTCTGATATATGGTCATGTGGGGTTATCTTGTATGTTATTCTTACGGCTTGTCTTCCTTTCGACGAGACGAATCTGGCTCTGCTTTATAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCGGGTGCCAGAAATTTGATAAAGAGAACGCTTGACCCCAATCCCAATACTCGGATTACAATTGCAGGGATTAAAAAGGATGTTTGGTTCAAGACTGATTATAATCCTGTTTCTCCTTGTTATGATGATGATGATGAGGAGGAGGGTCCATTCATTGATCAGGATGATGCCATCTCAACGCATGATGAGTCATCTGAGTTTGAAATCAACCCAGAATCTCCCACTATTATCAATGCGTTTGAGTTAATTGGAATGTCTTCAAGTCTTGACCTATCCGGCTTCTTTGAGCTAGAGGATGTTACTGAGAGAAAGATCAGATTTACATCCAACCGCTCTGCCAAAGACCTGCTTGAGAGGATCGAGGTTATTGCAATGGATATGGGATTTCGAGTCCAAAAGAAAAGTGGGAAGGTTGGTACCCTGTTCTTAGAATTGAAAGAATTTGTTGTCCCCAAGGGGTAG 1155 43.98 MRIGKYDLGKTLGEGNFGKVKLAADHRSGRRFAVKILDKTKILHLNFSDQIKREISTLKRLRHPNVVRLYEVLASKTKIYMVMECATGGELFDRIESNGKVDEAEGRRLFQQLIDGLSYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYNGAASDIWSCGVILYVILTACLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIKRTLDPNPNTRITIAGIKKDVWFKTDYNPVSPCYDDDDEEEGPFIDQDDAISTHDESSEFEINPESPTIINAFELIGMSSSLDLSGFFELEDVTERKIRFTSNRSAKDLLERIEVIAMDMGFRVQKKSGKVGTLFLELKEFVVPKG 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4348608 4352679 - Sed0002311.2 Sed12g0728 731684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0728 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g0728 384 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0728 384 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Sed12g0728 384 Gene3D Kinase associated domain 1, KA1 310 379 - -
Sed12g0728 384 SUPERFAMILY Protein kinase-like (PK-like) 2 271 IPR011009 -
Sed12g0728 384 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165(InterPro)
Sed12g0728 384 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0728 384 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g0728 384 FunFam Non-specific serine/threonine protein kinase 1 303 - -
Sed12g0728 384 Pfam NAF domain 305 364 IPR004041 GO:0007165(InterPro)
Sed12g0728 384 CDD CIPK_C 309 369 - -
Sed12g0728 384 Gene3D Transferase(Phosphotransferase) domain 1 1 309 - -
Sed12g0728 384 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 368 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed12g0728 384 FunFam Non-specific serine/threonine protein kinase 1 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1101 Sed-Chr2:48340440 Sed12g0728 Sed-Chr12:4348608 1.30E-181 dispersed
Sed12g0728 Sed-Chr12:4348608 Sed14g1595 Sed-Chr14:24086252 1.40E-107 dispersed
Sed12g0727 Sed-Chr12:4347372 Sed12g0728 Sed-Chr12:4348608 5.00E-213 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79974 PF00069 Pkinase 5.70E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0728 K07198 - csv:101205987 671.003