Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0731 ATGGAGCAGAGAGGGAAAGCGAGTGGTGTGAACTCTACGATGTCGTCTCGCGGCGGCGTTAGGGTTTCTTCGAAGGCTATGGAGTCGCCGAAGCGGATGGTTTCTGTGTCGGCCGTTGAATCGACGCCTAAATCTGCTGTGAAGAAGCAAAGCTCGAGAGTTAGCAGATCTCCGACGCCGATTGCTCCGAAGAACGTTGGAGTCTCCGCTCGAGTGGTCAACCGCGGTGGTCTCAAGCAAGTTTCGCAGCGGCGTTGCTTGAATGTTGAGGATTCTACTGATTTGCAGGCGAAGCTTTGTTTCGCCGAGGATTTGATTAAGGATTTGCAGTTTCAGTTGGTGGAGTTAAAGGAGGAGTTGCAGAAGTCTCAGTGCTTGAACGTGGAACTTCAATCGCAGAACGATTTGCTCGTTCGTGACCTAGCCGCGGCCGAAGCGAAGTTCGTCGATGCCAGCGTTAACGATCAGGTGAGGAAGAGGGAATCAGTTGCAGAGTACAATCATCAAATTCGTATCGAAAATGGAAATTCATGTCGGAATGTTAGGGATTCGGGGAGCAAGACTCTACCGAGGCCGCCTCCACCGCCACCACGGGCACCACCTCCGCCTCCGCCGCCTCTTCCCGTTCAATCCGTGCCTCGAGCAGTGGCCACTCAGAAATCTTCAGATCTCGTTCGCCTCTTTCACTCGTTGAGTAAGAAAGAGGGGAAAAGAGATCCTCCATTGTTGGGGAAACCAGCTGCGATCAATGCTCATAGTAGCATTGTTGGGGAAATTCAGAATCGTTCTGCGCATCTTATCGCTATAAGAGCAGATATTGAAACCAAAGGAGAATTCATCAATGGCCTCATTGTCAAGGTGCTTGTTGCAGCTTATACAGACATAGAAGATGTTCTCAAGTTTGTTGATTGGCTTGATTCTCAACTCTCATCATTGGCTGATGAGCGGGCTGTGTTGAAACATTTCAAGTGGCCCGAGAAGAAAGCCGATGCCATGCGAGAAGCAGCCATAGAATACCGTGCACTTAAACTACTAGAAAATGAGATCTCTTTGTACAAGGATGACACTAATTCTCCATGCGAGGCGGCCTTGAAGAAGATGGCAAGCTTATTAGACAAGTCGGAGCGAAGCATACAACGCCTAATCGGGCTTCGAAACACCGTCATGCATTCTTATCGGGACTTGAAACTCCCAACAAATTGGATGCTAGACTCCGGAATCATGAGTAAGATAAAGCACGCCTCTATGAATCTGGCCAAGATGTACATGAAAAGGGTGAAAACAGAGCTCGATTCAATACGCAGTTCGGATAAAGAATCGAACCAGGAGTCTCTTCTACTTCAGGGAGTTCATTTTGCATACAGAACTCACCAGTTTGCTGGTGGGCTTGATTCAGAAACACTGTGTGCTTTTGAGGAAATAAAACAATGGGTTCCAAGACAAGTGCCCCCTTCTTCAGGATTGATAGTTGGGATACCATCATCTTAA 1488 48.25 MEQRGKASGVNSTMSSRGGVRVSSKAMESPKRMVSVSAVESTPKSAVKKQSSRVSRSPTPIAPKNVGVSARVVNRGGLKQVSQRRCLNVEDSTDLQAKLCFAEDLIKDLQFQLVELKEELQKSQCLNVELQSQNDLLVRDLAAAEAKFVDASVNDQVRKRESVAEYNHQIRIENGNSCRNVRDSGSKTLPRPPPPPPRAPPPPPPPLPVQSVPRAVATQKSSDLVRLFHSLSKKEGKRDPPLLGKPAAINAHSSIVGEIQNRSAHLIAIRADIETKGEFINGLIVKVLVAAYTDIEDVLKFVDWLDSQLSSLADERAVLKHFKWPEKKADAMREAAIEYRALKLLENEISLYKDDTNSPCEAALKKMASLLDKSERSIQRLIGLRNTVMHSYRDLKLPTNWMLDSGIMSKIKHASMNLAKMYMKRVKTELDSIRSSDKESNQESLLLQGVHFAYRTHQFAGGLDSETLCAFEEIKQWVPRQVPPSSGLIVGIPSS 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4362464 4367014 + Sed0000719.2 Sed12g0731 731687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0731 495 Coils Coil 106 147 - -
Sed12g0731 495 MobiDBLite consensus disorder prediction 1 63 - -
Sed12g0731 495 MobiDBLite consensus disorder prediction 175 215 - -
Sed12g0731 495 MobiDBLite consensus disorder prediction 1 22 - -
Sed12g0731 495 PANTHER PROTEIN CHUP1, CHLOROPLASTIC 64 476 IPR040265 GO:0009658(PANTHER)|GO:0009707(PANTHER)
Sed12g0731 495 MobiDBLite consensus disorder prediction 35 59 - -
Sed12g0731 495 SUPERFAMILY Formin homology 2 domain (FH2 domain) 192 206 - -
Sed12g0731 495 MobiDBLite consensus disorder prediction 188 211 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0731 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0731 Sed-Chr12:4362464 Sed14g1507 Sed-Chr14:23388876 1.10E-64 dispersed
Sed12g0730 Sed-Chr12:4362464 Sed12g0731 Sed-Chr12:4362464 4.60E-260 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g269 . . . . . . . . . . . . Car06g01351 . Sed12g0731 Cpe08g00129 . Bhi01g01139 Tan10g1128 Cmetu06g1150 . Hepe05g1340 . Lcy11g1300 . . . . . . . . . . . . . . Cme06g00837 . Blo07g00125 . . . . . . . Cmo06g01585 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013373 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 27