Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0763 ATGGAGAAGAAATTCGAAGACTCAATCATGGGCTCGGAAAATTCCGCCGGAATTTCCTCTCCGGCGGGGTTTTTCGACGACTTTCCTGCCGGAGCCTTTGGTTTTTCCGGCATGTTCGACATACCATGTGAAATGGATGATAAATCTTCTAATTGTTCTTCTTCCTTTGACTTGTTTGGTGGTGGAATTGGAACCTATGATTTTAATTATAATCCTTCTTCTTTGTTTGATTTGGTTTCCACGGCGGCGCCGCCGCTTTCCTCGCCGGCATCCACCTTGCCGGAGTTGTCCGAGGTGCTTAATGCGCCGGCGACGCCTAATTCTTCGTCGGTTTCTAATTCCTCTTCCAATGAAGCTGCTGCCGTTGAAGAGGTTGACAAAGACAACATTGAGAAGACTTCTAATGTGTTGAAGCCAAAAAAGAAGAACGAAAAGAAGCCAAGAGAACCCAGATATGCTTTCATGACAAAGAGTGATATTGATCATCTCGACGACGGTTACCGATGGCGGAAGTACGGGCAGAAGGCGGTGAAAAACAGCCCTTATCCGAGAAACTATTATCGTTGCACAACGGCAGCGTGCGGAGTGAAGAAGAGGGTGGAGCGGTCATCTGACGACCATTCGATCGTCATCACGACGTACGAAGGCCAACACACTCACCAAAGTCCGGTATTGCCACGAGGGAGTATCCGAATCCTATCCGAATCCACGAACTCCCTCGTCACCAATCACGCTGCCACCGAACTTCTATTCCAACACAACACTCCTCAGCCCTTCATATACAGCCCTCCACCACCATTTCTAACAATCGAATCGTCGTTGCCAAGTCCCCGCCCTCCCTCCTCTTTCCCATTGCCATCGCCATCATCGTCTCAAGCTTCGTTGCTTCGAGACCACGGGCTACTGCAGGACTTGGTGCCATTGCAAATGAGGAAGGAACCAAAAGATGAGCAAAATAGATGA 963 49.01 MEKKFEDSIMGSENSAGISSPAGFFDDFPAGAFGFSGMFDIPCEMDDKSSNCSSSFDLFGGGIGTYDFNYNPSSLFDLVSTAAPPLSSPASTLPELSEVLNAPATPNSSSVSNSSSNEAAAVEEVDKDNIEKTSNVLKPKKKNEKKPREPRYAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRNYYRCTTAACGVKKRVERSSDDHSIVITTYEGQHTHQSPVLPRGSIRILSESTNSLVTNHAATELLFQHNTPQPFIYSPPPPFLTIESSLPSPRPPSSFPLPSPSSSQASLLRDHGLLQDLVPLQMRKEPKDEQNR 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4605024 4607028 - Sed0022876.1 Sed12g0763 731719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0763 320 SMART WRKY_cls 163 222 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0763 320 MobiDBLite consensus disorder prediction 101 150 - -
Sed12g0763 320 MobiDBLite consensus disorder prediction 271 320 - -
Sed12g0763 320 MobiDBLite consensus disorder prediction 121 150 - -
Sed12g0763 320 MobiDBLite consensus disorder prediction 101 120 - -
Sed12g0763 320 FunFam WRKY transcription factor 57 149 223 - -
Sed12g0763 320 ProSiteProfiles WRKY domain profile. 158 223 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0763 320 MobiDBLite consensus disorder prediction 271 286 - -
Sed12g0763 320 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 105 234 IPR044810 GO:0003700(InterPro)
Sed12g0763 320 SUPERFAMILY WRKY DNA-binding domain 155 223 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0763 320 Gene3D WRKY domain 149 224 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g0763 320 Pfam WRKY DNA -binding domain 164 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3085 Sed-Chr4:41837200 Sed12g0763 Sed-Chr12:4605024 1.20E-55 dispersed
Sed05g1272 Sed-Chr5:23853056 Sed12g0763 Sed-Chr12:4605024 3.00E-44 dispersed
Sed09g1307 Sed-Chr9:37187546 Sed12g0763 Sed-Chr12:4605024 3.10E-41 dispersed
Sed10g0448 Sed-Chr10:2821915 Sed12g0763 Sed-Chr12:4605024 1.40E-26 dispersed
Sed11g0865 Sed-Chr11:20890431 Sed12g0763 Sed-Chr12:4605024 4.60E-25 dispersed
Sed12g0763 Sed-Chr12:4605024 Sed14g1557 Sed-Chr14:23766438 1.70E-34 dispersed
Sed14g0501 Sed-Chr14:4948077 Sed12g0763 Sed-Chr12:4605024 1.20E-19 transposed
Sed12g0763 Sed-Chr12:4605024 Sed02g1129 Sed-Chr2:48492949 4.30E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40137 PF03106 WRKY 4.20E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0763 - - - 0.0