Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g0766 ATGGCGTCGTCTCAGATTCTGAATCCTGTATCGCGTGATTCATCGAGGAAGAAAAAGAAGAAGAAATCAGCAAGAGAAGGCGACCGTCAAGATCAGGAACACATAAACTGGAATTCGCAATCGCAGCATCAAATCTACTCGTCGAAGCTGCTGCGCGCCTTGAGTCAGGTCAGGATCAGTCCGTCGCCGCCGTCGCCGCGCCGTGGACGAGCGGTGCGGGAGGCGGCGGATACGGTGCTGGCGATGACGGCCAAAGGAAGAAGCAGGTGGAGCAGAGCGATCTTGACGAAGCGCGTGAAGATCAAGTTCCGGAAGCAGAATCGGGCGGCGGAGAAGGCTCGTGGGAGTGGAAACGGCCGCCGGAAGAAGCCGAGAGTCAGCGTTTTCCGGCTGAGAGGGAAGGGATCGGCAAGTGTACAGAGAAAAGTCCGGCTGCTTGGCCGGCTTGTCCCCGGCTGCCGGAAACAACCGCTGCCGGTGATTCTGGAGGAAGCGACCGATTACATACCTGCTCTGGAGATGCAGATCCGAGTCATGAGCGCCATATTCAACTTCGTTTCAACCTCTTCTTCTTCAACTGGTATGGATGCTTCCATCTCCCCACCTACTTAA 612 56.21 MASSQILNPVSRDSSRKKKKKKSAREGDRQDQEHINWNSQSQHQIYSSKLLRALSQVRISPSPPSPRRGRAVREAADTVLAMTAKGRSRWSRAILTKRVKIKFRKQNRAAEKARGSGNGRRKKPRVSVFRLRGKGSASVQRKVRLLGRLVPGCRKQPLPVILEEATDYIPALEMQIRVMSAIFNFVSTSSSSTGMDASISPPT 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4636764 4639159 - Sed0008004.1 Sed12g0766 731722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g0766 203 MobiDBLite consensus disorder prediction 105 124 - -
Sed12g0766 203 CDD bHLH_AtIBH1_like 130 182 IPR044549 GO:0006355(InterPro)
Sed12g0766 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 188 IPR036638 GO:0046983(InterPro)
Sed12g0766 203 MobiDBLite consensus disorder prediction 1 43 - -
Sed12g0766 203 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 37 186 IPR044660 GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g0426 Sed-Chr11:4051328 Sed12g0766 Sed-Chr12:4636764 8.80E-25 dispersed
Sed04g3086 Sed-Chr4:41862879 Sed12g0766 Sed-Chr12:4636764 1.40E-53 transposed
Sed12g0766 Sed-Chr12:4636764 Sed02g1131 Sed-Chr2:48525292 2.00E-52 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g0766 - - - 0.0